Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J05
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   283   3e-77
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   278   7e-76
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   117   2e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    61   2e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.7  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    28   1.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.7  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   8.8  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  283 bits (693), Expect = 3e-77
 Identities = 124/153 (81%), Positives = 139/153 (90%)
 Frame = -1

Query: 612 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 433
           SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDW
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350

Query: 432 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 253
           CPTGFK+GI Y+PP  VPG  +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVH
Sbjct: 351 CPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 410

Query: 252 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 154
           WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  278 bits (682), Expect = 7e-76
 Identities = 123/153 (80%), Positives = 137/153 (89%)
 Frame = -1

Query: 612 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 433
           SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDW
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346

Query: 432 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 253
           CPTGFK+GI  +PP  + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 406

Query: 252 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 154
           WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  117 bits (282), Expect = 2e-27
 Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
 Frame = -1

Query: 615 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 436
           VSV E+T   F+  N MV  DPRHG+Y+    L+RG V  K+V+  I +++TK +  FV+
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343

Query: 435 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 256
           W P      +   PP      DL   + +   + N+T+I E + RL  +F  M+ ++AF+
Sbjct: 344 WIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFL 395

Query: 255 HWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 157
           HWY GEGM+E EF+EA     DL +  + Y+E G+D
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
 Frame = -1

Query: 612 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 436
           +V ++      P NQMV  +P +   +++   + +G+  P DV+ ++  I+ +R   F+ 
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350

Query: 435 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 256
           W P   +V ++ + P +     ++ +     ML+N T+IA  + R   ++D +  + AF+
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405

Query: 255 HWYVGEGMEE---GEFSEAREDLAALEKDYE 172
             Y  E + E    EF  +R+ +A L  +YE
Sbjct: 406 EQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 512 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 378
           VV   P +  RP++P  P  LS     V PV+  V +   PP  P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 600 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 475
           +  ACFEP N    C   H K   C  L    +  KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 308 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 135
           G+   TS TS T S       S++     S+P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 134 EPKSTK 117
           EP+ TK
Sbjct: 208 EPRFTK 213


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 472 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVXDLGD 609
           S G   +LGY ++     A++V+A + V   HL+ G      D  +
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSE 452


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 608 SPRSXTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 429
           +P + T+ ++  +    +TPV ++      CT  TS P   T P   S  ++ S++    
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583

Query: 428 QPVSRSVSTTS 396
            PV+ +  TTS
Sbjct: 584 TPVTTTNCTTS 594



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -2

Query: 608 SPRSXTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 429
           +P + T+ ++  +    +TPV ++      CT  TS P   T   + S P   +N +T  
Sbjct: 420 TPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTST 477

Query: 428 QPVSRSVSTTSHP 390
                S   TS P
Sbjct: 478 SIPYTSTPVTSTP 490


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 476 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 390
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 495 WVRRHHGTAYSKPCTCHDGG 554
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,390
Number of Sequences: 5004
Number of extensions: 51748
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)