Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J04
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1714 + 28946888-28947118                                         31   1.4  
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    30   2.4  
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    30   2.4  
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    29   3.2  
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    29   5.6  
03_04_0155 - 17773121-17773576,17773744-17774322                       29   5.6  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    28   9.7  
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282...    28   9.7  

>07_03_1714 + 28946888-28947118
          Length = 76

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 282 WGARKGKKRRINSPVLLRGVSWGRVSGLRVGGQMSSTRGGDL 407
           W  R+GKK+R+ +    +G   GRV G+ V G + + RGG L
Sbjct: 31  WSTREGKKKRVTATQQPKG-RGGRVGGVDV-GFVGTWRGGKL 70


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 191 KRSKERRHLHVILERNTF---TAYRPLVTSRLTLGSSEREEEAN*FTSVAEGRELGQSER 361
           K S E RHL + LER       A + L   R   GS+E+E E N    +AE +   + ER
Sbjct: 634 KSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEIN-QKKIAELKMELERER 692

Query: 362 LARGRPNEQHARRRPQV 412
             R +  E++   + +V
Sbjct: 693 NERIKLEEEYEEVKNEV 709


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
 Frame = -3

Query: 606 TTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQTSQRWF 427
           +T+   S PG      PG+ R+ S  L  S  P M RSS  +    R PA    ++    
Sbjct: 220 STISATSRPGSSSSNVPGISRATS--LSSSTVPSMSRSSSRSSTPTRQPAM-RSSAPAVG 276

Query: 426 RHPR--HT*GRRRACCSFGRPRAS--RSLCPSSRPSA 328
           R P    +        S  RP A+  R+  PSS PS+
Sbjct: 277 RSPSVGRSSSISSLTSSINRPAANGGRNSAPSSAPSS 313


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = -1

Query: 566 PAHQDWNAPAHQDWN---APAHQSWNGAPSWQSGAPAHQPANIRLANDGSG 423
           P +Q  N P +Q  N   AP +    G PS+Q G   +         DG G
Sbjct: 342 PGYQGGNPPPYQGGNPGYAPGYHGQGGNPSYQQGGDNYNAGVPAYERDGQG 392


>03_05_0327 -
           23154014-23154942,23155169-23155316,23155606-23156622,
           23156753-23157217,23160258-23161247
          Length = 1182

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 164 TSTLKLKVNKRSKERRHLHVILERN 238
           T++LKLK NK+S  ++H H + E N
Sbjct: 851 TNSLKLKQNKKSARQKHHHGVPEGN 875


>03_04_0155 - 17773121-17773576,17773744-17774322
          Length = 344

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 285 GARKGKKRRINSPVLLRGVSWGRVSGLRVGGQMSSTRGGDLRCVEDAG 428
           G R G   R    V+ RG   GRV+G   GG+ ++ RGG    V   G
Sbjct: 15  GRRGGGSARRAKAVVRRG--GGRVAGTSGGGREAARRGGAAAAVRQGG 60


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 566 PAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQ 459
           P +   N P +Q  N P +Q+  G P +  GAP +Q
Sbjct: 333 PGYHGGNPPPYQAGNPPPYQA--GNPVFAGGAPGYQ 366


>05_01_0361 -
           2824728-2826043,2826288-2826507,2827616-2827702,
           2827726-2827980,2828704-2828733
          Length = 635

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 433 MVPA-SSTHLRSPPRVLLIWPPTRKPLTLP 347
           MVP   ST    PP VL ++PP R   T+P
Sbjct: 303 MVPTMGSTGFPPPPTVLHMYPPPRGQFTMP 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,325
Number of Sequences: 37544
Number of extensions: 374635
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)