Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J04
(788 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens ... 33 1.6
AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei... 31 4.7
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 4.7
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 4.7
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein. 31 4.7
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein. 31 4.7
BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein. 31 6.3
X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein. 30 8.3
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 8.3
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 8.3
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 8.3
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 8.3
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 8.3
>AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens
cDNA FLJ46366 fis, clone TESTI4051388. ).
Length = 286
Score = 32.7 bits (71), Expect = 1.6
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 427 PASSTHLRSPPRVLLIWPPTRKPLT-LPQLTPLSNTGELIRLFFPFRAPQSE-PARN*RS 254
P ++ R+PPR L PPTR P T +P P + T P R P +E PAR +
Sbjct: 58 PPRASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTAS---PARTPPTESPARTPPT 114
Query: 253 VSRER 239
S R
Sbjct: 115 ASPAR 119
>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
kinase protein.
Length = 1007
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 558 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 394
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 558 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 394
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 558 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 394
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
Length = 1007
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 558 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 394
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
Length = 1028
Score = 31.1 bits (67), Expect = 4.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 558 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 394
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 459 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 514
>BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein.
Length = 765
Score = 30.7 bits (66), Expect = 6.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 578 DWNAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSG 474
D+ P D+ P +DW P + + G P SG
Sbjct: 602 DFRCPPEDDFRHPREEDWRRPPPEHFGGLPQSTSG 636
>X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein.
Length = 1400
Score = 30.3 bits (65), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 570 CPRPPGLERSRSPGLECSRSPIMERSS 490
CP PPGLE + SP C P++ SS
Sbjct: 407 CPNPPGLE-ALSPNTSCRHFPLLVSSS 432
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.3
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -3
Query: 624 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 448
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTQ----PRSRSRSK 283
Query: 447 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 331
S+ R P HT RRR R R SRS P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSR-SRSYSPRRRPS 316
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.3
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -3
Query: 624 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 448
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 447 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 331
S+ R P HT RRR R R SRS P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSR-SRSYSPRRRPS 316
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.3
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -3
Query: 624 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 448
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 447 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 331
S+ R P HT RRR R R+ R P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSRSRRRPSPRRRPS 317
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.3
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -3
Query: 624 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 448
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 447 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 331
S+ R P HT RRR R R SRS P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSR-SRSYSPRRRPS 316
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.3
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -3
Query: 624 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 448
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 447 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 331
S+ R P HT RRR R R+ R P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSRSRRRPSPRRRPS 317
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,297,771
Number of Sequences: 237096
Number of extensions: 1967353
Number of successful extensions: 6761
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6721
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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