Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J04
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical ...    31   0.94 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    28   6.6  

>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 566 PAHQDWNAPAHQDWNAPAHQSWNG--APSWQSGAPAH 462
           PAHQDW      DW+A   + W G   PS  SG P +
Sbjct: 59  PAHQDWG-----DWSANRDEQWRGPPGPSGPSGPPVY 90


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
 Frame = -3

Query: 609 PTTMERPSSPGLECPR---PPGLERSRSPGLECSRSPIMERSSLLAIRCP---RSPAR*H 448
           P+  + P +P     R   PP   R RSP    S +P   RS   + + P   RSP+   
Sbjct: 415 PSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSK 474

Query: 447 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSR 337
             S R  R P     RR++      PR  RS   SSR
Sbjct: 475 SRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSR 511


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
 Frame = -3

Query: 618 CSCPTTME--RPSSPGLECPRPPGLERSRSPGLE---CSRSPIMERSSLLAIRCPRSPAR 454
           C CP   +   P S G   P+PP    + +PG      +R+P   R+     R P +  R
Sbjct: 274 CPCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTR 333

Query: 453 *HQTSQRWFRHP 418
               SQ   R P
Sbjct: 334 PAPASQPPVREP 345


>AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical
           protein Y71F9B.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 265 YEPAHFGELGKGRRGELIHQCC 330
           Y+P  F ELG G+R  + H+CC
Sbjct: 330 YDPIAFSELGIGKRTVIRHECC 351


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 566 PAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAH 462
           P    + AP  Q ++AP+ QS+ G P   S AP +
Sbjct: 343 PPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGN 377


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 591 PSSPGLECPRPPGLERSRSPGL 526
           P  PGL  P PPG+     PG+
Sbjct: 44  PQPPGLSIPAPPGISLPTPPGI 65


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
            protein Y54G2A.21 protein.
          Length = 967

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 188  NKRSKERRHLHVILERNTFTAYRPLVTSRLTLGSSEREEEAN*FTSVAEGRELGQSERLA 367
            N R K+RR++HV+ E         +  +    G S  +   N  TS+A G   G S ++ 
Sbjct: 810  NYRDKKRRYIHVLRELMCRNIMNDMTMNTSIPGLSIPDFSQNVQTSIAFG---GNSTKIG 866

Query: 368  -RGRPNEQHARRRP 406
             RG P+   +R  P
Sbjct: 867  FRGLPSNALSRPNP 880


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,942
Number of Sequences: 27780
Number of extensions: 276232
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)