Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J03
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 51 2e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 50 5e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 8e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 6e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 36 0.007
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.012
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.016
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 35 0.016
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.021
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.021
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.027
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.036
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.048
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 32 0.084
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.15
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.34
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.59
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.78
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.78
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 1.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.4
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 1.4
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 4.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 5.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.6
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 9.6
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F V V+++ + T SRGF F+ F +E+A A + E GR + V +
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRS 180
Query: 540 RAHTPTPGIYMGKPTRISS 484
R H+PTPG YMG R +S
Sbjct: 181 RPHSPTPGKYMGYDRRRNS 199
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 49.6 bits (113), Expect = 5e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
F P+++++VV + TG+S G+ FV FE D K+A G+ ++GRRI VD
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVD 174
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = -2
Query: 708 DPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD----YSITQ 541
+PVD + +V D +TG+S+GF F+ +ED +A + T +++ R +RVD Y + Q
Sbjct: 56 EPVD-INLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQ 114
Query: 540 RAHTPTPGIYMGK 502
+ P + +G+
Sbjct: 115 KEKEPANLVPLGE 127
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F + P+ VV + +TG +RG+ FV F +EDA+ A E ++ GR +R+D++ +
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPR 84
Query: 540 R 538
+
Sbjct: 85 K 85
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2
Query: 666 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPT 523
GR GF FV+ +D + A+ A N G EIDGR I VD+++++ A T
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEAT 192
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -2
Query: 675 AKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSIT-QRAH-TPTPGI---- 514
A GRS+GF F+ F + A +A G EI ++I +D I R H P P +
Sbjct: 533 AGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI-IDAEIEWARKHKIPEPQLPNID 591
Query: 513 YMGKPTRI 490
Y +P R+
Sbjct: 592 YNDRPRRL 599
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.3 bits (95), Expect = 8e-05
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTP 520
+V++D ++GRS+G+ +V FE E AK A EIDGR + +D S R P P
Sbjct: 293 RVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQP 348
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
+ +++ D ++GR +GF +V F D++ AK E G I GR R+D+S
Sbjct: 392 IQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFS 441
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
F + PV ++V+D +TG +G+ F F D E +A + E+ R+IRV++
Sbjct: 27 FNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEF 82
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
F PV Q+VID ++G+ +G+ F + D A A + RR+RVD+
Sbjct: 25 FKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDF 80
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 657 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
RG FV ++ +A +AKN TGM + G +I+V ++
Sbjct: 210 RGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFA 245
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 669 TGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTPGIYMGKPT 496
TGRS+GF V FE+ DA + + G GR +++ Y+ P + G P+
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPS 373
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.016
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ-RAHTPTP 520
+++ D +T SRG+ FV F D D K A E G R IRV + + +AH +P
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSP 274
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.7 bits (76), Expect = 0.016
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 535
V +++VID T RSRGF +V FE D A +G ++ GR +R+ + +R+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFE-TADTLSAALALSGEDLMGRPVRITVAEPRRS 172
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
QV+ D +TG S + F+ F++ E + A + + ID RI VD+S
Sbjct: 274 QVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.021
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+++V + ID KT +GF ++ F D +DA A E GR + V
Sbjct: 349 LEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 660 SRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
S GF FV F+D A A + G +DG ++ + S
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 684 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 535
V K G SR F F+ F++ EDA A ++ RI V ++ R+
Sbjct: 37 VAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRS 86
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
Q++ + G S+GFCF F++ DA++A + G + G ++ ++
Sbjct: 340 QLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 666 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
G RG F F E+A++ G EI+GRR+RV++
Sbjct: 240 GIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEW 277
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.1 bits (72), Expect = 0.048
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 672 KTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+ GRS G C VYFE +DA+ A+ + G I++
Sbjct: 119 RAGRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQI 156
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 32.3 bits (70), Expect = 0.084
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
+ +V + D +TGR++GF FV + D + A A++ G + +R ++S
Sbjct: 228 IQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFS 278
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 657 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 538
R + FV F++ +DA A +E +DGR IR++ + R
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNR 160
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -2
Query: 669 TGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTPGIYMGKPTRI 490
T ++RG FV +E+++DA+ A + +G R + V Y +RA + P I
Sbjct: 46 TVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQDLAARFPLSI 105
Query: 489 SS 484
+S
Sbjct: 106 NS 107
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.59
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 696 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
K +VV D + G++RGF FV F+D + A E G I R +++
Sbjct: 58 KTKVVRD-REGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKL 102
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDM--EDAKIAKNECTGMEIDGRRIRV 559
+D V++V D KT +GF ++ F+D D + NE E GR +R+
Sbjct: 296 IDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPE--GRTLRI 343
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 684 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
++D K GF FV ED DA+ N+ G E G RI V+
Sbjct: 30 ILDCKL--MNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 672 KTGRSRGFCFVYFEDMEDAKIAKNECTG--MEIDGRRIRVDYS 550
+T SR F FV +ED DA+ A E G +E G +RV+++
Sbjct: 42 RTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYF--EDMEDAKIA 607
F PV Q+V D +GRS+G +V F ED A IA
Sbjct: 260 FEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 687 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME--IDGRRIRVDYSITQRAHTPTPGI 514
V+ D+ TGRSRGF F+ F++ + NE E +DG+ I +I + T +
Sbjct: 194 VMRDSTTGRSRGFGFLTFKNPK----CVNEVMSKEHHLDGKIIDPKRAIPREEQEKTAKM 249
Query: 513 YMG 505
++G
Sbjct: 250 FVG 252
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 687 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+++D TGR RGF FV +E+ E A A + I G+ + V
Sbjct: 278 LMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEV 319
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
F + ++ + +D T GFCFV + + +DA + + +D R IR D
Sbjct: 52 FSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRAD 106
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+D + + I K+ ++G+C++ + + A A ++ E+DG + V
Sbjct: 125 IDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 575 PSISIPVHSFFAILASSMSSK*TKQNPRERPVFASI--TTCTLSTGSILRKDM 727
P+ SIP+ + +L++ SS T NP P +++ T+S+ S DM
Sbjct: 127 PNNSIPLMANSCLLSADNSSSSTTSNPNVAPPISTLPDPVATISSSSSSHLDM 179
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 714 SMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDG-RRIRVD 556
S+ P +V + GRS+G + F DA A + G +DG R+++V+
Sbjct: 78 SIGPCKRVSLAY-GPNGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVE 130
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAK--IAKNECTGMEIDGRRIRVDYSITQR 538
V V ++ + +T +SR F F F ++D+K + N T + IDG + V +S R
Sbjct: 98 VSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEANFPT-LVIDGIDVSVRFSRAAR 153
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
F + + +++ D + G+S+GF FV + E+A A E + G+ + V
Sbjct: 384 FSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,034
Number of Sequences: 5004
Number of extensions: 45927
Number of successful extensions: 154
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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