Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J03
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 78 6e-15
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 50 3e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 48 1e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 48 1e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 43 2e-04
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 43 2e-04
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 42 7e-04
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 40 0.003
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 39 0.004
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 38 0.009
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 38 0.009
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.011
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 38 0.011
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 38 0.011
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 37 0.020
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 36 0.026
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 35 0.079
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 35 0.079
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 35 0.079
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 35 0.079
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 35 0.079
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 35 0.079
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 35 0.079
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.32
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 33 0.32
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 33 0.32
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.56
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 31 0.74
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 31 0.98
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 0.98
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 0.98
AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical... 31 0.98
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.3
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 1.3
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 30 1.7
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 29 3.0
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 3.0
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 3.0
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 3.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 3.9
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 3.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.9
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 6.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 6.9
Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical pr... 28 9.1
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 78.2 bits (184), Expect = 6e-15
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPT 523
++K +V D +G SRGF F+YF +EDA A+++ ++DG +IRVD+S+T+R H+PT
Sbjct: 102 INKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFSLTKRGHSPT 161
Query: 522 PGIYMG 505
PG YMG
Sbjct: 162 PGQYMG 167
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
F ++ V+ V++V D +TGR RGF FV F + A+ A + G+ +GR +RV+Y+
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -2
Query: 681 IDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
+D K+GR F FV FED DA+ A G E DGRRIRV+++
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -2
Query: 681 IDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
+D K+GR F FV FED DA+ A G E DGRRIRV+++
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
F S+ ++ V++V D +TGR RGF F+ F + A+ A + G E +GR +RV+
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVN 79
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
V V++V D +TGR RGF FV F + A+ A ++ G++ +GR +RV+
Sbjct: 30 VSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVN 78
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/46 (36%), Positives = 31/46 (67%)
Frame = -2
Query: 693 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
+++V D +TG+ +G+ F+ F D++ A++A G E+ GR +RVD
Sbjct: 47 IKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = -2
Query: 729 TISFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
T F + PV V+++ + + S+GF FV ++ +DA A+ E G I+GRR+ V+ +
Sbjct: 117 TAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
Query: 549 ITQRAH 532
TQR H
Sbjct: 175 -TQRVH 179
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = -2
Query: 729 TISFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
T F + PV V+++ + + S+GF FV ++ +DA A+ E G I+GRR+ V+ +
Sbjct: 117 TAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
Query: 549 ITQRAH 532
TQR H
Sbjct: 175 -TQRVH 179
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F + PV V+++ + + S+GF FV ++ +DA A+ E G I+GRR+ V+ + TQ
Sbjct: 2 FEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA-TQ 58
Query: 540 RAH 532
R H
Sbjct: 59 RVH 61
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = -2
Query: 723 SFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSIT 544
+F+ V + + +D ++G+ RGF FV F+ EDA +A + E+ G+ IRV+++
Sbjct: 30 AFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFARP 89
Query: 543 QRA 535
+A
Sbjct: 90 PKA 92
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
F + + K+ +V D + G+ RG+ F+ + D + A + G+++DG+R+ VDY
Sbjct: 124 FEAYGKIKKLTMVHD-EAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDY 178
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
F V + ++ D TG+S+GF F+ ++D +A + G+ + R IRVD+
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH 113
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHT-- 529
V V+++ + + S+GF FV E +DA+ A+ E G I+GR+I V+ + T R H+
Sbjct: 179 VSDVEIIFNERG--SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA-TARVHSKK 235
Query: 528 --PTPGI 514
PT GI
Sbjct: 236 VKPTGGI 242
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHT-- 529
V V+++ + + S+GF FV E +DA+ A+ E G I+GR+I V+ + T R H+
Sbjct: 179 VSDVEIIFNERG--SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA-TARVHSKK 235
Query: 528 --PTPGI 514
PT GI
Sbjct: 236 VKPTGGI 242
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
F S+ ++ ++V D TG+S G+ FV + EDA A + G+ + + I+V Y+
Sbjct: 62 FTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYA 118
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F ++ V V+++ D++TGRS+G C+V F D E + G + G +++ + +
Sbjct: 45 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGL-ALNGQRLMGAPLQIQRTCAE 103
Query: 540 R 538
R
Sbjct: 104 R 104
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F S ++K+ + +D+ +RGF + F + +DA+ + + E+ GR IR+ SI Q
Sbjct: 147 FESFGRIEKIDLEVDSNR-ENRGFATITFRNADDAQKSCEQLNNFELAGRCIRL--SIKQ 203
Query: 540 RAHTP 526
+ P
Sbjct: 204 ESQAP 208
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F ++ V V+++ D++TGRS+G C+V F D E + G + G +++ + +
Sbjct: 190 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGL-ALNGQRLMGAPLQIQRTCAE 248
Query: 540 R 538
R
Sbjct: 249 R 249
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F S ++K+ + +D+ +RGF + F + +DA+ + + E+ GR IR+ SI Q
Sbjct: 292 FESFGRIEKIDLEVDSNR-ENRGFATITFRNADDAQKSCEQLNNFELAGRCIRL--SIKQ 348
Query: 540 RAHTP 526
+ P
Sbjct: 349 ESQAP 353
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
GF FV F+D DA+ A ++ G E+ G R+ +DYS
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
GF FV F+D DA+ A ++ G E+ G R+ +DYS
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
GF FV F+D DA+ A ++ G E+ G R+ +DYS
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
F V +VQVVID KTG +GF V F E A A + G GR + +
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 723 SFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+F K +VV +++T +S+G+ FV F D ED A E G + R I++
Sbjct: 222 AFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKL 276
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -2
Query: 726 ISFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
I F ++ ++V D ++G S + F+ F++ + + A + + ID RRI VD+S
Sbjct: 259 IIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -2
Query: 726 ISFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
I F ++ ++V D ++G S + F+ F++ + + A + + ID RRI VD+S
Sbjct: 259 IIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -2
Query: 726 ISFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
I F ++ ++V D ++G S + F+ F++ + + A + + ID RRI VD+S
Sbjct: 190 IIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 34.7 bits (76), Expect = 0.079
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = -2
Query: 726 ISFLS--MDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
I+F S + PV+ V++V D TG+ +GF FV F+ +A + T ++++ R +R+
Sbjct: 263 ITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSMET-IKMEKRDLRIT- 320
Query: 552 SITQRAH 532
+ ++ H
Sbjct: 321 KVMKKGH 327
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+ V + D + +S+GF FV F + DA+ A + G +DGR +RV
Sbjct: 45 IGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+ V + D + +S+GF FV F + DA+ A + G +DGR +RV
Sbjct: 45 IGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 34.7 bits (76), Expect = 0.079
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 693 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEID-GRRIRVDYSI 547
+++++D +G SRG+ FV + + EDA A G EI G+ ++V+ SI
Sbjct: 229 LRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSI 278
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
GFCFV + EDA++A + +D R IR D+
Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIRADW 112
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
F S + +V++D + GRS+GF FV FE E+A A + I + + V
Sbjct: 363 FSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 666 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
G S+G+ FV+FE A+ A + GM + +++ V
Sbjct: 182 GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
F S + +V++D + GRS+GF FV FE E+A A + I + + V
Sbjct: 363 FSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 666 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
G S+G+ FV+FE A+ A + GM + +++ V
Sbjct: 182 GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 607
F V + QV D GRSRGF FV F E K+A
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F VD ++ D +T R F F+ FE+ E A A ++ T R V ++ Q
Sbjct: 130 FEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ-TKQTFGTRECDVKKAVPQ 188
Query: 540 RAHTP 526
P
Sbjct: 189 GKRFP 193
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 607
F V + QV D GRSRGF FV F E K+A
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F VD ++ D +T R F F+ FE+ E A A ++ T R V ++ Q
Sbjct: 130 FEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ-TKQTFGTRECDVKKAVPQ 188
Query: 540 RAHTP 526
P
Sbjct: 189 GKRFP 193
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F + + + +D +TG +G+ V +E ++A A ++ ++ G+ ++VD+ +
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDWCFVK 134
Query: 540 RAHT 529
T
Sbjct: 135 GKKT 138
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 669 TGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
T +RG FV +ED+ DAK A +G + R + V Y
Sbjct: 53 TAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLY 91
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+V ID + G S+G+ FV+FE E A+ A + GM + G+++ V
Sbjct: 150 KVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 598
F S + +V+ D + GRS+GF FV FE E+A A E
Sbjct: 337 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTE 376
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+V ID + G S+G+ FV+FE E A+ A + GM + G+++ V
Sbjct: 87 KVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F S + +V+ D + GRS+GF FV FE E+A A E + + + V +I Q
Sbjct: 274 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIAQ 330
Query: 540 R 538
R
Sbjct: 331 R 331
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
+V ID + G S+G+ FV+FE E A+ A + GM + G+++ V
Sbjct: 150 KVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F S + +V+ D + GRS+GF FV FE E+A A E + + + V +I Q
Sbjct: 337 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIAQ 393
Query: 540 R 538
R
Sbjct: 394 R 394
>AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical
protein Y22D7AR.12 protein.
Length = 1137
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 726 ISFLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 598
++ L M K V++ GRSR CF Y E + +AKN+
Sbjct: 972 LALLDMVNASKTPVIVHCYDGRSRSACFAYME-LACQMVAKND 1013
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 553
GF FV F+D DA A ++ G E+ G R+ +++
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
+++ D +G S+GF F+ F E + A G + R I V Y+
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 705 PVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
PV V + D T +GF FV F EDA A +++ G+ I+V+
Sbjct: 38 PVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN 87
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 690 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
+++ D +G S+GF F+ F E + A G + R I V Y+
Sbjct: 141 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 705 PVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 556
PV V + D T +GF FV F EDA A +++ G+ I+V+
Sbjct: 48 PVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN 97
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = -2
Query: 657 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 535
RG+ +V ++++EDA+ + G +IDG + V+ +I +++
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQS 215
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 541
F S + +V+ D + GRS+GF FV FE E+A A E + + + V +I Q
Sbjct: 277 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIAQ 333
Query: 540 R 538
R
Sbjct: 334 R 334
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
GF FV FED DA+ A ++ G ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
GF FV FED DA+ A ++ G ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 654 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 559
GF FV FED DA+ A ++ G ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 702 VDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 550
V ++ + D TG +GF FV FE +DA A E + + ++V+++
Sbjct: 202 VIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEWT 252
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFED 628
F V K ++++D T + RGF FV F+D
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFED 628
F V K ++++D T + RGF FV F+D
Sbjct: 96 FTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFED 628
F V K ++++D T + RGF FV F+D
Sbjct: 96 FTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFED 628
F V K ++++D T + RGF FV F+D
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 720 FLSMDPVDKVQVVIDAKTGRSRGFCFVYFED 628
F V K ++++D T + RGF FV F+D
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 657 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI 547
+GF F+ + A+ AK G I GR++RV +++
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAV 186
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 657 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI 547
+GF F+ + A+ AK G I GR++RV +++
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAV 186
>Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical
protein F09F3.2 protein.
Length = 323
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 604 LCNLSIFHVLKVNEAKPSGTARLC 675
+CNL +F+ +KPSG +LC
Sbjct: 33 ICNLYLFYKFVTRASKPSGFQKLC 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,071
Number of Sequences: 27780
Number of extensions: 274648
Number of successful extensions: 688
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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