Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J02
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 109 5e-25
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 49 9e-07
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 28 1.8
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 28 1.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 3.2
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 26 5.5
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 5.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 5.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 7.3
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 25 9.6
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 9.6
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 9.6
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 109 bits (262), Expect = 5e-25
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Frame = -1
Query: 572 DPSLVSLALGQDLTALGLNLNSPDN---LNLTFAGPWADTPCR-PQDMDYHVPPEYLING 405
D + +L LG DL ALG +L + ++ PWA+ + P P N
Sbjct: 13 DSEMSTLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQPMFKLPACYKN- 71
Query: 404 SIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWQYHMEEKVWISQAPGM 225
+ A ++ ++ ++ LFY+FY DV+Q AAA EL NR W++H E +VW++ PGM
Sbjct: 72 -VNPPPAISKIFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGM 130
Query: 224 PMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRPQLPPH 90
+++T +ERG Y FFD +W+++ K+F L Y+ LE R Q H
Sbjct: 131 KPLQRTPQFERGYYMFFDPIHWKRIKKDFLLMYAALEDRAQSAVH 175
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 356 DLLFYLFYCFVGDVLQIAAAAELYNREWQYHMEEKVWISQAPGMPMVEKTSTYERGTYYF 177
D LFY+FY G Q A EL + W++H + W + M+ T +E G+Y +
Sbjct: 543 DTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMI--TDEFESGSYRY 600
Query: 176 FDAH-NW-RKVPKEFHLDYSKLE 114
FD +W ++ +F Y LE
Sbjct: 601 FDFEGDWVQRKKADFRFTYQYLE 623
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 215 EKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGR 108
E YE Y++ HN RK+ FHL +++ R
Sbjct: 553 ELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKAR 588
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 382 LYDSEDIKKIYYSICSTVSLVTFYKLRLQQSYTIANGN 269
L+ + + + Y+S+ TVSL+ +K+R Q TI GN
Sbjct: 81 LFMGDYVDRGYHSV-ETVSLLIAFKIRYPQRITILRGN 117
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 343 ICSTVSLVTFYKLRLQQSYTIANGNIIWRRRCGSHK 236
I +V+L + RL Q+YT N ++ G HK
Sbjct: 298 ILLSVALFALFSSRLSQAYTFTNNALLCCHELGLHK 333
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 626 TKPIWNSRSIDFIRAAESDPSLVSLALGQDLT 531
T +W+SRS D I+ E L ++A+ Q T
Sbjct: 159 TMKVWDSRSKDCIKTIEEKYPLTAVAIAQQGT 190
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 473 WADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKED 354
WAD P P D + + Y +G + K L G Y++D
Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDV--KKMNLGAGTYRDD 77
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 344 YLFYCFVGDVLQIAAAAELYNREWQY 267
+L CFV D Q A AAEL W Y
Sbjct: 1382 FLKRCFVSDPNQRATAAELLMDPWVY 1407
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 629 DTKPIWNSRSIDFIRAAESDPS-LVSLALGQDLTALGL-NLNSPDNLN 492
+T +W S++I+ I SDP+ + +L L +G +L PD+LN
Sbjct: 1124 ETIYVWQSKTIEMIFRYVSDPAEALESSLYSSLIIIGSDDLVGPDSLN 1171
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 382 LYDSEDIKKIYYSICSTVSLVTFYKLRLQQSYTIANGN 269
L+ + + + Y+S+ TVSL+ KLR TI GN
Sbjct: 94 LFMGDYVDRGYHSV-ETVSLLVAMKLRYPNRITILRGN 130
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -1
Query: 254 KVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEG 111
++WI Q +P + + + D W+K F +DY EG
Sbjct: 15 QIWIDQPASLPFQDSINLIKE------DKEKWKKEKTAFLIDYDWFEG 56
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 256 RRCGSHKRPACQWSRRLQRTNAAPTTSSMRTI 161
R G HKR A + R + APTT + TI
Sbjct: 490 RESGQHKRMASLTNSREMQIQHAPTTFAAETI 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,470
Number of Sequences: 5004
Number of extensions: 63587
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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