Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_I24
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 239 2e-63
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 103 3e-22
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 48 1e-05
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 40 0.003
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 38 0.015
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 37 0.020
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460... 36 0.045
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 33 0.32
06_03_0378 + 20070955-20071354,20071483-20072132 29 5.2
03_05_0185 + 21713500-21714291 29 5.2
03_03_0166 - 15027065-15028465 29 6.9
09_02_0397 - 8549273-8549380,8549718-8549765,8549875-8549964,855... 28 9.1
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 239 bits (586), Expect = 2e-63
Identities = 108/176 (61%), Positives = 132/176 (75%)
Frame = -1
Query: 735 PLLEXPMMATLEXVLXVNSQHPDKXDTPEXNDFLNNLCNTHQIECSPPRTTXRLLDKLVS 556
P + M+ LE + +N P + E N +L + C + ++C PP+TT RLLDKLV
Sbjct: 417 PFRKIDMIEELEAMAKLNI--PKDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVG 474
Query: 555 VFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQR 376
FLEE C+NPTFI++HP+IMSPL+K+HR PGLTERFE++V K E+CNAYTELNDP QR
Sbjct: 475 HFLEETCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQR 534
Query: 375 ERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIK 208
+RFEEQ K+R +GDDE DE FCTALEYGLPPTGGWGLG+DRLTM LTDS NIK
Sbjct: 535 QRFEEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIK 590
>02_05_0003 - 24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 103 bits (246), Expect = 3e-22
Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 40/172 (23%)
Frame = -1
Query: 576 LLDKLVSVFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTEL 397
+L+++ +E + PTF+LD+P +SPL+K HR GLTERFE+++ +EI NA++EL
Sbjct: 486 VLNEVFETVVESSLVQPTFVLDYPVEISPLAKPHRRYAGLTERFELFICGREIGNAFSEL 545
Query: 396 NDPATQ---------------------RERFEEQAK----NRAAGDDETPPTD------- 313
DP Q R RFE Q K RAA E T+
Sbjct: 546 TDPIDQLVFGGFDKLEMQRPDLVNMQKRGRFENQIKQHNAKRAAMTKEVKSTEGKHEEDD 605
Query: 312 --------EAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFPAMK 181
E F T+LEYG+PP G GLG+DRL M LT+S +I++V+ FP +K
Sbjct: 606 FSYEVTLDEDFLTSLEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPVLK 657
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/94 (32%), Positives = 48/94 (51%)
Frame = -1
Query: 471 DVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTAL 292
D P + F+V+V +EI + ++ P E QA+ R G D + A+ A
Sbjct: 415 DDPRYSNSFDVFVRGEEIISGAQRVHVP----EVLARQAEER--GIDVG--SIAAYVDAF 466
Query: 291 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 190
YG PP GG+G+G++R+ M NI++ LFP
Sbjct: 467 RYGAPPHGGFGVGLERVVMLFCGLGNIRKASLFP 500
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 39.9 bits (89), Expect = 0.003
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 291 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 190
+ G PP GG G+DRL M L N+I++V+ FP
Sbjct: 637 DMGAPPHGGIAYGLDRLVMLLAGENSIRDVIAFP 670
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 37.5 bits (83), Expect = 0.015
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = -1
Query: 471 DVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTAL 292
D P + F+V++ +EI + ++ P +R E G D + T ++ +
Sbjct: 456 DNPAYSNSFDVFIRGEEIISGAQRIHLPELLTKRATE------CGIDAS--TISSYIESF 507
Query: 291 EYGLPPTGGWGLGVDRLTMFLT 226
YG PP GG+G+G++R+ + T
Sbjct: 508 SYGAPPHGGFGVGLERVLLLST 529
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 288 YGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 190
YG P G+GLG +RL F T +NI++ + FP
Sbjct: 513 YGSVPHAGFGLGFERLVQFATGMDNIRDTIPFP 545
>03_02_1019 +
13244003-13245202,13245347-13245493,13245772-13246099,
13246930-13246994
Length = 579
Score = 35.9 bits (79), Expect = 0.045
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 297 LYKTLHRLGEFHRHQQHDSWLALRIFRVVSPGHLIRCRH 413
++K LH G + + + W AL FR+ +P H +R RH
Sbjct: 515 MFKMLHPQGSYTDYISNQLWRALEHFRMTTPNHAVRDRH 553
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 33.1 bits (72), Expect = 0.32
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 384 TQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKE 205
+QRE + K R E + +G G+GLG +R+ +F T NI++
Sbjct: 487 SQREERLDLLKTRIQDAGLPLEPYEWYLDLRRFGSVKHSGFGLGFERMILFATGLENIRD 546
Query: 204 VLLFP 190
V+ FP
Sbjct: 547 VIPFP 551
>06_03_0378 + 20070955-20071354,20071483-20072132
Length = 349
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 243 NGLHRGPTRRSAAGHILELYKTLHRLGEFHRHQQHDSWLALRIFRV 380
N +H+ ++ G +L +Y+T+ L + RH Q L R++RV
Sbjct: 209 NNMHQEYIVQAPWGGLLRIYRTVDILEKEQRHNQVVRTLGFRVYRV 254
>03_05_0185 + 21713500-21714291
Length = 263
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 562 GFCISGGGVYKSDIYIGSSSDYESPL*VPSR 470
G+ GGG Y SD Y + + YE PL V R
Sbjct: 29 GYGGGGGGYYTSDPYNAAPAAYEDPLAVAGR 59
>03_03_0166 - 15027065-15028465
Length = 466
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 286 WPAADRRVGPRCRPFDYVPYR 224
W AA RR G RC DYV Y+
Sbjct: 24 WTAASRRRGMRCYLLDYVCYK 44
>09_02_0397 -
8549273-8549380,8549718-8549765,8549875-8549964,
8550479-8550562,8551119-8551280,8551729-8551781,
8552763-8552807,8553840-8553876,8554212-8554320,
8554391-8554818,8554939-8555085
Length = 436
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 333 RHQQHDSWLALRIFRVVSPGHLIRCRHY 416
RH D+W+ L + SPG+L RC H+
Sbjct: 170 RHTMEDAWVLLPDASMESPGNL-RCAHF 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,804,469
Number of Sequences: 37544
Number of extensions: 493491
Number of successful extensions: 1153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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