Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I23
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    91   1e-19
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   2.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   8.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   8.0  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 49/67 (73%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
 Frame = -1

Query: 711 PXINVGLSVSRVGSAAQTKAMKQWPXH-EAGXAQYREVAAFAQFGSDLDAXTQQLLNRGM 535
           P INVGLSVSRVGSAAQ KAMKQ     +   AQYREVA+FAQFGSDLDA T+  L+RG+
Sbjct: 391 PAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRGL 450

Query: 534 RLTELLK 514
           RLTELLK
Sbjct: 451 RLTELLK 457



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 31/79 (39%), Positives = 56/79 (70%)
 Frame = -2

Query: 512 QGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQI 333
           Q QY P+A+EEQV +IYCGV+G+LDK+   ++  FE +F  ++++S   ++  I K+G +
Sbjct: 458 QPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYLRSSGAEIMEAIRKEGVL 517

Query: 332 TPESDASLKKIVTDFLATF 276
           +  ++ SLK ++ +FL++F
Sbjct: 518 SKTTEDSLKAVIKEFLSSF 536


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = -2

Query: 524 SSSXQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTS------HQGL 363
           SSS   + +P A++ +       +   L++LDP KIT  + E    I +        QG 
Sbjct: 508 SSSVPPRPIPSAMKGKAPASAISIEA-LEELDPPKITTIDGESPSSISSRLPSSNLEQGS 566

Query: 362 LSTIAKDGQITPESDASLKKIVT 294
            S++ K  +  P+  A     VT
Sbjct: 567 SSSVTKSPESMPDPSAKASSPVT 589


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 440  DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 285
            DK+DP    AF+K  T ++ TS       + KD   T  S   L  I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 357  GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 491
            G+   + S+ +  +FLL   DF G +L+  T     +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 92  YQHSIQPI*MLYYYSSH 142
           Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,823
Number of Sequences: 5004
Number of extensions: 49952
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)