Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_I21
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.3
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 3.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 7.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.3
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 625 VHVEKPVPYPVQGTSARPYPVEKHIPYPVEKAV 527
VH +P ++ RP VEK +P+ +E AV
Sbjct: 158 VHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAV 190
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -3
Query: 664 PTPLKYTVTAPVPVHVEKPVPYPVQGTSARPYPVEKHIPYPVEKAVPFPVNIPVDRPYP 488
PTP +AP + P P+ +A P P I P+ +P +P P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -3
Query: 658 PLKYTVTAPVPVHVEKPVPYPVQGTSARPYPVEKHIPYPVEKAVPFPVNI-PVDRPYPVH 482
PL + V + V+ P Y + P+P H P P PV+ PV RP PV
Sbjct: 104 PLPHDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPL----HNPLPVSCQPVLRPPPV- 158
Query: 481 IEKHVPVH 458
VP H
Sbjct: 159 --PQVPSH 164
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 670 QXPTPLKYTVTAPVPVHVEKPVPYPVQGTSARPYPVEKHIPYP 542
Q PT + PV ++ + PV P S P P HI YP
Sbjct: 535 QQPTTIPLQPNIPV-LNQQYPVMIPAMEDSRGPLPSPAHIMYP 576
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.0
Identities = 24/88 (27%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Frame = -3
Query: 772 PVPXKVHGXXPXPGKFPNQXLPRXEARXHTX*XNQXPTPLKYTVTAPVPVHVE--KPVPY 599
P P P P P P A P P PVP PVP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 598 PVQGTSARPYPVE-KHIPYPVEKAVPFP 518
P G P P E +P P P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -3
Query: 664 PTPLKYTVTAPVPV-HVEKPVPYPVQGTSARPYPVEKHIPYPVEKAVPFPVNIP 506
P P PVP PVP P G P P K P P + V+ P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -3
Query: 634 PVPVHVEKPVPYPVQGTSARPYPVEKHIPYPVEKAVPFPVNIP 506
PVP K P P+ A P PV P VP P + P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAP-----PVPIPTSTP 1050
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 640 TAPVPVHVEKPVPYPVQGTSARPYPVEKHIP-YPVEKAVPFPVNIPV 503
+ P+P +A P+P +P YP + +P NIPV
Sbjct: 266 SVPIPPATVNDTSMEYYLPNAYPHPTGISLPFYPFDSGIPVSPNIPV 312
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 628 PVHVEKPVPYPVQGTSARPYPVEKHIPYPVEKAVPFPVNIPVDRPYPVHIEKHVP 464
P + VP PV G + P P IP P+ ++ V++ + + E+H+P
Sbjct: 585 PSVIPPRVPTPVPGRTLSPKPT--RIPTPIPSSL--NVSLESSKKPEIFHERHIP 635
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 664 PTPLKYTVTAPVPVHVEKPVPYPVQ---GTSARPYPV-EKHIPYP 542
PTP+ +P P + P+P + +S +P E+HIP P
Sbjct: 593 PTPVPGRTLSPKPTRIPTPIPSSLNVSLESSKKPEIFHERHIPTP 637
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = -3
Query: 664 PTPLKYTVTAPVPVHVEKPVPYPVQGTSARPYP 566
P P V P P + P P P+ G P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,778
Number of Sequences: 5004
Number of extensions: 38677
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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