Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I20
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.80 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   4.3  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   4.3  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.7  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -2

Query: 615  QXSXQLRLXTGXKAGRRVTXIPXXCPGTAASRGDVSYSPPEPHAALKLKSMQELQSFLD 439
            Q S +  L  G  +GR    +P  C     +   V + PP P     LK + EL  F D
Sbjct: 986  QVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGILKLLVELYQFAD 1044


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 417  TTADTDSSLETIATPAWT 470
            TT DT S  E  ATP+WT
Sbjct: 1007 TTGDTPSKRELPATPSWT 1024


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 423 PLSLDNFSFSSRAILGEYVQPCADVADPLVFNETEITKRLEEAR 292
           PLS+  +  + + +LG  V   + V DP V +E+  T  L   R
Sbjct: 278 PLSIVGWERNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMR 321


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 298  LLQPLGDLGLVEDQRVGDVGAGLHVLAEDRARTKAEV 408
            L++ L DLG  ED+ + D    L +  ED A++  EV
Sbjct: 998  LIKVLSDLGSTEDEEISDCYLALPI--EDYAKSLTEV 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,513
Number of Sequences: 5004
Number of extensions: 20570
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)