Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I20
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500...    34   0.12 
03_06_0191 - 32228642-32228949,32229028-32230567                       29   3.4  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   6.0  
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    29   6.0  

>02_04_0540 +
           23748610-23748930,23749054-23749157,23749889-23750063,
           23750149-23750212,23750867-23750946,23751128-23751287,
           23751415-23751476,23751607-23751666,23751824-23751882,
           23752194-23752275,23752691-23752740,23752847-23752980,
           23753508-23753590,23754070-23754142,23754461-23754477
          Length = 507

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 22/80 (27%), Positives = 43/80 (53%)
 Frame = -2

Query: 477 KLKSMQELQSFLDSNPCPPLSLDNFSFSSRAILGEYVQPCADVADPLVFNETEITKRLEE 298
           ++  M  LQ+   S P PP++    +  ++ ++ E ++   ++ +  + +E +  K L+E
Sbjct: 260 RVSLMTSLQTANQSIPPPPVAAAPDA-RTQEMIDEKLKKAEELGENGMIDEAQ--KLLDE 316

Query: 297 ARALSSLGSRPTPPPLDRRM 238
           A AL  LG+RP P P   +M
Sbjct: 317 AEALKKLGARPQPVPDSAKM 336


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 540 PGTAASRGDVSYSPPEPHAALKLKSMQELQSFLDSNPCP 424
           P  AA+RG     PP PHAA    + Q   + L S   P
Sbjct: 15  PRLAAARGISGQPPPSPHAAAPTSTPQAFHAHLASLAAP 53


>09_06_0147 +
           21195222-21195377,21195471-21195522,21196842-21204362,
           21204453-21205031,21205176-21205484,21205638-21205718,
           21205971-21206279,21207430-21207816,21207964-21208767,
           21208856-21209218,21209437-21209667,21209934-21210278,
           21210494-21210712,21210759-21210815,21210978-21211322,
           21211538-21211756,21211803-21211859,21212022-21212366,
           21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 474 LKSMQELQSFLDSNPC-PPLSLDNFSFSSRAILG 376
           L S +E+ ++++  P  PP SLDNFS S   I G
Sbjct: 356 LSSSKEVGTYIEPTPQKPPASLDNFSESDGPISG 389


>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -2

Query: 540 PGTAASRGDVSYSPPEPHAALKLKSMQELQSFLDSNPCPPLSLDNFSFSSRAILGEYVQP 361
           P   +  G ++  PP        K  ++  + LD+N C   +  N + S+  ILG  + P
Sbjct: 351 PDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCASAASSNKNPSANVILGGCMPP 410

Query: 360 CADVAD 343
             D+ D
Sbjct: 411 QKDLVD 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,368
Number of Sequences: 37544
Number of extensions: 210032
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)