Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I18
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    59   9e-10
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.5  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    28   1.5  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    26   6.0  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = -3

Query: 659 GEGMDEMEFTEAESNMNDLVSEYQQY 582
           GEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQY 425



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 23/52 (44%), Positives = 30/52 (57%)
 Frame = -2

Query: 825 IPXNXKPXVCDIPPRVXXXXXXXXXXXXPFQELFKRISEQFTAMFRRKAFLH 670
           IP N    VC +PP+               QE+F+R+ +QF+AMFRRKAFLH
Sbjct: 345 IPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLH 396


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 371 KLPVMTNYLNEHNLFNTFLDIPPGLVE 291
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 659 GEGMDEMEFTEAESNMNDLVSEYQQ 585
           GEGM+E EF+EA  ++  L  +Y++
Sbjct: 414 GEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 659 GEGMDEMEFTEAESNMNDLVSEYQQ 585
           GEGM+E EF+EA  ++  L  +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALERDYEE 434


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 229 CTYVNKKCLF*-ISLYKFQI*LSTRPGGISRNVLNRL 336
           C +V K  LF  + +Y     L   PGG+   VLNR+
Sbjct: 209 CKFVGKVSLFTTLIVYSLYDSLHPSPGGLKHQVLNRI 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,556
Number of Sequences: 5004
Number of extensions: 48392
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)