Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I16
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    33   0.062
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.0  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    28   1.8  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   4.0  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    26   7.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   9.4  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 76  RSLPGQRSQVRDAAVQGLLLLVRSDRLGHV 165
           + LP  R  +RDA+ Q LL+L +SD L +V
Sbjct: 99  KCLPSPRQSIRDASHQALLILAKSDALDYV 128


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 199 RPEAHGRLDSEQRDQGDHSGPGE-AGPGPLHRGPG 98
           RP+ H   D E R+   H  PGE   P P+H  PG
Sbjct: 184 RPKHH-EFDDEDREFPAHHEPGEHMPPPPMHHKPG 217


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 610 PSHQFSSGXMEPFFRNKAKSNFAWLTPYRAS 702
           P  +FS+  ++P   N  + N+A L PYR S
Sbjct: 226 PKEEFSAIYIKPLLENPDERNWAKLLPYRHS 256


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 449 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAP 348
           V+ T +  +E   QTV+ L  +IEG     W AP
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAP 183


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 455 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQ 360
           K  E  E EWN+ +N+     E+A+E E T Q
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEITLQ 116


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 508 GVCGSREIRTKIGCLVGPRKLKRPR 434
           G+C +  +   I CL+ PR++  PR
Sbjct: 337 GLCAASGVILSIACLIKPRRVGDPR 361


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 616 HQFSSGXMEPFFRNKAKSNFAWLTPYRAS 702
           H F S  MEPF+ +K  +     TP+  S
Sbjct: 657 HAFCSNCMEPFYEHKTSTCPQCETPFSVS 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,938
Number of Sequences: 5004
Number of extensions: 54519
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)