Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_I16
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0227 + 16601538-16601908,16603197-16603378,16603495-166035... 38 0.009
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 33 0.34
09_06_0231 + 21733151-21734905 31 0.79
02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885 30 2.4
09_02_0331 - 7324332-7325924,7327220-7327402 29 3.2
12_01_0376 - 2934115-2934603 29 5.6
03_02_0104 + 5645285-5645677,5645990-5646034,5646225-5646454,564... 29 5.6
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 29 5.6
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910... 28 7.4
04_04_1695 + 35433975-35437040 28 7.4
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 28 9.7
02_05_0092 + 25749070-25750638 28 9.7
>02_03_0227 +
16601538-16601908,16603197-16603378,16603495-16603577,
16604609-16604717,16606754-16606806,16606988-16607023
Length = 277
Score = 37.9 bits (84), Expect = 0.009
Identities = 28/71 (39%), Positives = 30/71 (42%)
Frame = -1
Query: 280 GEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGP 101
G V RG G PA E RGA R EA R +R G G G AG G G
Sbjct: 2 GAPAVEARRGTVKMGAPAVEARRGAAKRWEARRR--RGRRGDGGAGGGGAAGRGE-DGGA 58
Query: 100 GFAGQEVNGSE 68
G G+ V G E
Sbjct: 59 GGGGESVCGEE 69
>04_03_0501 + 16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/106 (22%), Positives = 48/106 (45%)
Frame = -1
Query: 400 KHWRTQSRERRRSSGARQGQELLIQAKKENVLLQLEAAXQGEAHVRLLRGEAASGLPARE 221
K + Q E +R ++ E +A++E ++EA + +A +A AR+
Sbjct: 847 KRIQEQLEEHKRQLMIQEEMEAQKRAQEEE---EMEAQKRTQAEEEKEAAKAEE--EARK 901
Query: 220 VERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQE 83
++R A +++ +Q D + + G+ GP+ GPG G +
Sbjct: 902 MDRAADEEAAGSKQVNEDQMDVDNSNADGDEFVGPIPPGPGTQGDD 947
>09_06_0231 + 21733151-21734905
Length = 584
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 682 LTPYRASKGFWSCVATSEAEPRAXS-AVHAXCCS 780
L Y KGFWS + TS PR A CCS
Sbjct: 432 LVAYHLDKGFWSVIQTSRPPPRLRDYAPTLLCCS 465
>02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885
Length = 466
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = -1
Query: 334 LIQAKKENVLLQLEAAXQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQ 155
L Q K + L A G + +++SG P R V+ P + G E+ D
Sbjct: 42 LPQPKSALLFSSLPAPKSGPVFSAIPPPKSSSGNPKRVVQFRPPPIRQPTGESSDEEDDD 101
Query: 154 GDHSGPGEAGPGP 116
+ P EA P P
Sbjct: 102 AEKRRPSEAEPRP 114
>09_02_0331 - 7324332-7325924,7327220-7327402
Length = 591
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 322 KKENVLLQLEAAXQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDHS 143
K+E +QL G + + + G + G+P+ PEA G+ S Q ++GD
Sbjct: 56 KRERGEVQLTTVI-GNGGTKAIVIDVEPGDDSSPTSNGSPAAPEAEGQRYSSQEERGDGG 114
Query: 142 G 140
G
Sbjct: 115 G 115
>12_01_0376 - 2934115-2934603
Length = 162
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 454 RKLKRPRTNGTKVGTKP*KHWRTQSRERRRSSGA 353
R+++ P NG G +HWRT + R RSS A
Sbjct: 18 RRVRSPLANGGAAGDFELRHWRTPPK-RARSSAA 50
>03_02_0104 +
5645285-5645677,5645990-5646034,5646225-5646454,
5646549-5646624,5646705-5646781,5646960-5646990,
5647058-5647210,5647287-5647421,5647526-5647606
Length = 406
Score = 28.7 bits (61), Expect = 5.6
Identities = 30/98 (30%), Positives = 37/98 (37%)
Frame = -1
Query: 382 SRERRRSSGARQGQELLIQAKKENVLLQLEAAXQGEAHVRLLRGEAASGLPAREVERGAP 203
+R R RS + A +E + A +G A V + AA G E G
Sbjct: 2 ARPRTRSVARMEATAAAAAAAEEEEAGNPDGA-EGAAVVAVAPEAAAEG--PNEPNAGEA 58
Query: 202 SRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAG 89
SR G+ E G PG AGP R PG AG
Sbjct: 59 SREPDAGQASREPDVAGPSRQPGAAGPS---REPGAAG 93
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 306 STFSFLAWMRSSCPWRAPLLRLLSLDCVLQCFHG 407
S FSF +W S WR PLL C+ FHG
Sbjct: 842 SVFSF-SWKNVSATWRLPLLYSFEELCLPIDFHG 874
>10_05_0093 -
9108883-9109068,9109156-9109248,9109363-9109441,
9109529-9109639,9109715-9109857,9110050-9110522,
9110568-9111075,9111241-9111810,9111883-9112119,
9112196-9112465
Length = 889
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 205 PSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHR 107
P+RP A G + + G +S P + P P R
Sbjct: 40 PTRPPADGSSSDDSDEPGKYSSPSDPHPSPKRR 72
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 327 WMRSSCPWRAPLLRLL--SLDCVLQCFHGLV-PT--FVPFVLGRFNFLGPTKQP 473
WM C W+ P+ +L L +L C+ L+ PT FV+G +N+ ++P
Sbjct: 833 WMDGICKWKNPVTTILVHVLFLILVCYPELILPTVFLYLFVIGVWNYRRRPRKP 886
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 244 ASGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGP 116
A PA P+RP+ + R++G SG G A P P
Sbjct: 15 ADPAPAPAPAANGPARPDRSSYVPPHLRNRGASSGGGAAAPPP 57
>02_05_0092 + 25749070-25750638
Length = 522
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Frame = -1
Query: 391 RTQSRERRRSSGARQGQELLIQAKKENVLLQLEAAXQGEAHVRL-LRGEAASGLPAREVE 215
R + R+ R + + + + V +Q+ +A A V++ + E A+ +PA V
Sbjct: 89 RRRDRDSRPAPSVWEDEPPAVTPSVAPVYIQMPSANPAVAPVQIQMPSETAASVPAAPVP 148
Query: 214 RGAPSRPEAHG-RLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNGSERY-LCIE 50
APS+P + EQ ++ + G + + + +RY CIE
Sbjct: 149 VHAPSQPPVVAIAVKKEQNEKDEEEDNGRDDDDDGYSDSDYGMDTDDDDDRYDECIE 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,479,552
Number of Sequences: 37544
Number of extensions: 428310
Number of successful extensions: 1584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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