Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I13
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    96   6e-21
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.3  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.3  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   3.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.0  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    26   7.0  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   7.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
 Frame = -1

Query: 707 EKFXPENYSIWYAEYKYPRGLXK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNST 531
           E F PENYS+W  +Y YP  L + VFM+ NLI G FQRL+  RK  F    + GE+ ++T
Sbjct: 287 EHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNT 346

Query: 530 ISGVWVWRGKELV--FPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRK 357
           I+G +V +G + V  F ++ DW     SY + KLD +  E K  ++D ++W+    +GR+
Sbjct: 347 ITGAFVIKGHDYVPAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD-KPIEGRE 401

Query: 356 FNQGKIFK 333
              GK+ K
Sbjct: 402 VADGKVCK 409


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 403  SRTTSRGTEPTKTVESSTRARYSSECRPTSS 311
            S TTS  T  + T+ SSTR+  +SE   TSS
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 470 QVDYESYDWKKLD 432
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 502 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTR 347
           R S S  R+I    T P   R++    ++ +N   T     EP +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 511 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 624
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 244 IYI*MFLFCKVFYSYCMKCVYIGWTLVGIHLNILPWLNFLPSLSVPFHEK 393
           +YI M  +  +FY Y      +G  ++GI + IL  L   P + V +  +
Sbjct: 355 LYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPIIYVHYRRR 404


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = -3

Query: 435 GSFERGDQETCPGLLLVERNRQRR*KVQPGQDIQVNADQRPANVYTFHTITIKNFTKKKH 256
           G F  GD++  PG+L V +N Q   K Q G ++ +       N    H + + N      
Sbjct: 172 GLFGPGDRQLVPGMLSVLKNGQT--KFQLGDNLNLFDFTYIENAAYAHLLAMDNLLSSNP 229

Query: 255 SNVNRWMLAIFGTVLNLYNF 196
           +   +      G V+  ++F
Sbjct: 230 TANGQVFFITNGQVIYFWDF 249


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 523 PEMVELLSSPNRQTDAKACLRILSNLWNIPVIRLQLMNTLXSPRGYLYSAYQM 681
           P  +EL  +P     AK    +    +N   + + + NT  S RG+ +S++QM
Sbjct: 159 PGKLELSFTPKGNPSAKETYNVYE--FNGSGVAMSMYNTDDSIRGFAHSSFQM 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,961
Number of Sequences: 5004
Number of extensions: 69126
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)