Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I12
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.65 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   4.6  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   8.0  

>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 341 CVVIILLCFSFVFNKYFIL*RYQGVIYIYTCL 246
           C+VI ++ FS  F+ YF+L  YQ  + IYT +
Sbjct: 280 CLVIFVVAFSG-FSAYFLLNAYQASVPIYTSM 310


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 549 GLFCVCIWLVHVMRCNFIVCIN*MKKKINAALL 647
           GL  +C+++VH + C  ++C    +  +NA  L
Sbjct: 477 GLVRICLFIVHYLSCEKVLCEKLNRNCMNAQSL 509


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 601 MKLHLITCTSQMQTQKSPIERKLNLISND*LTQSQYCENEAYFIKSRIQ 455
           ++ H+IT + +    +S I+  LNL++ D L++ +   NE   +  +IQ
Sbjct: 82  LRNHIITLSKRSVNMESRIDDMLNLLNYD-LSEKRETSNEIPSLVQQIQ 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,888
Number of Sequences: 5004
Number of extensions: 64292
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)