Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I12
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    31   1.4  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    29   5.7  
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    28   7.5  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   10.0 

>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 500 RLCELIIRY---EVKFAFNGTFLRLHLARTRNEMQFHCVY*LNEEENQRR 640
           +L E+I+ +   +VK   +G +LRLH+    N+  FHC     +EENQ +
Sbjct: 141 QLREIILSFLLNKVKDEASGEYLRLHILYLINDWAFHCQ--RKKEENQMK 188


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 500 RLCELIIRY---EVKFAFNGTFLRLHLARTRNEMQFHCVY*LNEEENQRR 640
           +L E+I+ +   +VK   +G +LRLH+    N+  FHC     +EENQ +
Sbjct: 141 QLREIILSFLLNKVKDEASGEYLRLHILYLINDWAFHCQ--RKKEENQMK 188


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 416 ECVTIKVLPCYKNRLVCTQ*CKLN*CVVIILLCFSFVFNKYFIL 285
           +C  + VLP    +L CT       CVV++L+CF +    +F L
Sbjct: 84  DCFIMVVLPESVKQLYCTPRRAKITCVVLMLICFIYNIPHFFEL 127


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = +3

Query: 375 TVFITWQH---FYCNTLCSLLIR 434
           T+ IT+ H   F CNT+CS+L+R
Sbjct: 241 TLIITFTHLLFFGCNTICSILVR 263


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 299 Y*IQKKNKVR*LRRINLIYITVYTQDGFY 385
           Y I K NKV   R INL+YIT    +G +
Sbjct: 295 YRISKNNKVEMNRVINLLYITNENNEGHF 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,079,663
Number of Sequences: 27780
Number of extensions: 357023
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)