Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_I11
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 238 8e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 233 2e-62
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 8e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 7e-08
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.012
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 3.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 238 bits (582), Expect = 8e-64
Identities = 123/206 (59%), Positives = 143/206 (69%), Gaps = 3/206 (1%)
Frame = -3
Query: 747 SSITASLNXTRS-EWDLTEFQTNLVXTPVSTSHWSRTRQSSL-PRRPTMNSFPSPRSQTH 574
SSITASL S DL EFQTNLV P H+ S + + S + T+
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLV--PYPRIHFPLVTYSPIVSAAKAFHESNSVQEITN 297
Query: 573 ASSPPTRW*NATPVMASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 397
P ++A C RGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+
Sbjct: 298 QCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKI 357
Query: 396 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 217
GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGM
Sbjct: 358 GICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM 417
Query: 216 EEGEFSEAREDLAALEKDYEEVGMDS 139
EEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 418 EEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 233 bits (571), Expect = 2e-62
Identities = 122/206 (59%), Positives = 142/206 (68%), Gaps = 3/206 (1%)
Frame = -3
Query: 747 SSITASLNXTRS-EWDLTEFQTNLVXTPVSTSHWSRTRQSSL-PRRPTMNSFPSPRSQTH 574
SSITASL S DL EFQTNLV P H+ + + + S + T+
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLV--PYPRIHFPLVTYAPIVSAAKAFHESNSVQEITN 293
Query: 573 ASSPPTRW*NATPVMASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 397
P A ++A C RGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+
Sbjct: 294 QCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKI 353
Query: 396 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 217
GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGM
Sbjct: 354 GICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM 413
Query: 216 EEGEFSEAREDLAALEKDYEEVGMDS 139
EEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 414 EEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.2 bits (194), Expect = 8e-17
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Frame = -3
Query: 498 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 319
RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIG 369
Query: 318 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVG 148
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G
Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAG 429
Query: 147 MD 142
+D
Sbjct: 430 ID 431
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = -2
Query: 673 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 500
+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+
Sbjct: 260 FPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALF 317
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.4 bits (120), Expect = 7e-08
Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Frame = -3
Query: 564 PPTRW*NATPVMASTWLAVC-CTRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 388
P + + P S ++++ +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 387 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 211
+ P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416
Query: 210 --GEFSEAREDLAALEKDYE 157
EF +R+ +A L +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -2
Query: 670 PRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMVKCDP 536
PR HF L +Y P + E + +V ++ P NQMV +P
Sbjct: 264 PRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 506 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 363
A PVV P + RP++P P LS V PV+ V + PP P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 29.5 bits (63), Expect = 0.60
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 506 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 363
A PVV P + RP++P P S PV V + PP P
Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 503 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 357
VP V S P+ P +P PSV + V P SV P PEA
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA 691
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 500 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 360
P V S P+ P +P PSV + V P + SV P PE
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 503 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 360
VP S P+ P +P PSV + V P + SV P PE
Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 675
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 503 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 360
VP S P+ P P PSV + V P + SV P PE
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -1
Query: 500 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 357
P V S P+ P +P PSV + V P SV P PEA
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 678 VXTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 553
V P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 293 GLALTTSSTSCTPSVLSCTGTSVRVWRRENSPKPVRTWLPS--RRITKKSAWTPLKARVR 120
G+ TS TS T S S++ ++P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 119 EPKSTK 102
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 644 RDQWEVDTGVXTKLVWNSVRSHSERVXF 727
RDQW V T +VWN + + F
Sbjct: 289 RDQWVVSTSSQKTIVWNLALPNDRAIEF 316
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 636 QSSLPRRPTMNSFPSPRSQTHASSPPTR 553
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 461 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 375
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 464 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 369
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,390
Number of Sequences: 5004
Number of extensions: 69772
Number of successful extensions: 257
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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