Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I10
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   121   1e-28
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   120   2e-28
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   4.0  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  121 bits (291), Expect = 1e-28
 Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
 Frame = -3

Query: 727 PLIXFXQDSGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGS 548
           PL+ F +D+G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +FGS
Sbjct: 207 PLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGS 266

Query: 547 WKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 383
               ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 267 TTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 779 RXGKGKMXNRXXIQRKGP 726
           R GKGK+ NR  +QR+GP
Sbjct: 190 RAGKGKLRNRRHVQRRGP 207


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (290), Expect = 2e-28
 Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
 Frame = -3

Query: 727 PLIXFXQDSGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGS 548
           PL+ F +D+G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +FGS
Sbjct: 207 PLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGS 266

Query: 547 WKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 383
               ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 267 TTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 779 RXGKGKMXNRXXIQRKGP 726
           R GKGK+ NR  +QR+GP
Sbjct: 190 RAGKGKLRNRRHVQRRGP 207


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 375 AMLKLNPYAAVXEEESYLRAAQKEELE 295
           A+LK + Y ++ EEES  R  ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -3

Query: 571 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 392
           RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + +LN 
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELNK 318

Query: 391 LTNXQ 377
           + + +
Sbjct: 319 VRSFE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,551
Number of Sequences: 5004
Number of extensions: 39527
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)