Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_I10
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 121 6e-28
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 118 5e-27
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.0
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.4
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 5.5
02_04_0073 - 19471254-19472681 28 7.3
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.6
03_03_0122 - 14617879-14618871 28 9.6
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 9.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 121 bits (292), Expect = 6e-28
Identities = 57/116 (49%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Frame = -3
Query: 727 PLIXFXQD-SGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFG 551
PLI + + S + +AFRN+PGV+ LAPGGHLGRFVIWT+SAF +L+ ++G
Sbjct: 211 PLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYG 270
Query: 550 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 383
+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++ NPL N
Sbjct: 271 TFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKN 326
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2
Query: 779 RXGKGKMXNRXXIQRKGP 726
R GKGKM NR I RKGP
Sbjct: 194 RPGKGKMRNRRYINRKGP 211
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 118 bits (284), Expect = 5e-27
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Frame = -3
Query: 727 PLIXFXQD-SGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFG 551
PLI + + S + +AFRN+PGV+ LAPGGHLGRFVIWT+ AF +LD ++G
Sbjct: 210 PLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYG 269
Query: 550 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 383
+ TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + NPL N
Sbjct: 270 GFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKN 325
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2
Query: 779 RXGKGKMXNRXXIQRKGP 726
R GKGKM NR I RKGP
Sbjct: 193 RAGKGKMRNRRYINRKGP 210
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 639 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHQNKRR----TSTCPNRRWPTLTSHV 472
+S S+LR + LD+SSS +P S+ H HHQ + S+ P WP
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPE 433
Query: 471 FSSLMRSGRSSVLPTNA 421
S ++ SG LP +A
Sbjct: 434 PSPMLSSGLGLGLPYDA 450
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 625 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 485
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 560 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 682
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 585 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMR 454
+P G +P S HG HH++++ T N + L V ++R
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 607 GRFVIWTQSAFGRL-DPLFGSWK 542
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 607 GRFVIWTQSAFGRL-DPLFGSWK 542
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 575 ECGLSPDDETSKMTSRSQLQEVQ 643
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,023,972
Number of Sequences: 37544
Number of extensions: 295358
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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