Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_I09
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 148 6e-36
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299 41 0.001
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 30 1.8
01_01_1189 + 9454042-9455655 30 1.8
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 30 2.4
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 29 3.2
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545... 29 4.2
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 28 9.8
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 148 bits (358), Expect = 6e-36
Identities = 69/160 (43%), Positives = 102/160 (63%)
Frame = -1
Query: 612 PGITIATDIICGFPTETEADFEETMQLCRKYKFPSLFINQFFPRPGTPAAKMTRVPGQEV 433
PG+ IATDIICGFP ET+ DF +T+ L ++Y FP + I+QF+PRPGTPAA+M +VP EV
Sbjct: 275 PGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEV 334
Query: 432 KKRTKLLSDFFRSYEPYGHKVGETQEVLVTDVSHDKNYFVGHNEFYEQVLIPKEEKYMGK 253
KKR++ L+ F S+ PY G+ + + +T+++ D + VGH + Y QVL+ + +G
Sbjct: 335 KKRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGT 394
Query: 252 LVTVKITSASKFSMMGQPIDKPKMAGLTVPLKKGELSGVY 133
VKITS ++S+ G+ I+ +A T EL Y
Sbjct: 395 SADVKITSVGRWSVFGEVIEGSVVAKETQKHNHSELQEEY 434
>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
Length = 556
Score = 41.1 bits (92), Expect = 0.001
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Frame = -1
Query: 678 MKRGIQREPTSNTWSTISGKKXPGITIATDIICGFPTETEADFEETMQLCRKYKFPSLFI 499
M+RG RE I P + +++D I GF ETE + ET+ L R + ++
Sbjct: 358 MRRGYTREAYLELVQKIRSI-IPDVGLSSDFISGFCGETEEEHAETLTLVRAVGYDMAYM 416
Query: 498 NQFFPRPGTPAAK--MTRVPGQEVKKRTKLLSDFFR--SYEPYGHKVGETQEVLVTDVSH 331
+ R T A + + VP ++R L FR + + Y +VG Q VLV +
Sbjct: 417 FAYSMREKTHAHRNYVDDVPDDVKQRRLAELISTFRETTAKIYDSQVGTVQLVLVEGPNK 476
Query: 330 --DKNYFV-----GHNEFYEQVLIPK-------EEKYMGKLVTVKITSASKFSMMGQPID 193
+ + GH + V +P + +G + VKIT +S S+ G I
Sbjct: 477 RAPETEMIGKTDRGHRVSFASVPVPHTFEGDELRKPVVGDFIEVKITKSSTASLSGDVIA 536
Query: 192 KPKMA 178
+ ++
Sbjct: 537 RTSLS 541
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 405 FFRSYEPYGHKVGETQEVLVTDVSHDKNYFVGHNEFYEQVLIPKEEKYMGKLVTVKITSA 226
F S +P G+ VG+ L +K +F H EF L E Y GKLV +
Sbjct: 171 FSFSRDPRGYDVGDVSSTLQLTKFVNK-WFSQHREFLSNPLYVGGESYAGKLVPFLLQKI 229
Query: 225 SK 220
S+
Sbjct: 230 SE 231
>01_01_1189 + 9454042-9455655
Length = 537
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = -1
Query: 390 EPYGHKVGETQEVLVT-DVSHDKNYFV-----GHNEFYEQVLIPKEEKYMGKLVTVKITS 229
EP HK + ++ T DVS DK + G+ E ++V PK MG+ + +
Sbjct: 412 EPVSHKTEDDKQGADTPDVSEDKKTTLAAEKDGNGESKDEVAAPKSSNDMGREEKIDSSK 471
Query: 228 ASKFSMMGQP 199
S+FS P
Sbjct: 472 ESEFSAASPP 481
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 270 EKYMGKLVTVKITSASKFSMMGQPIDKPKMAGLT----VPLKKGELSG 139
EK+ GK K+TSAS + I K K L+ VPL+K + G
Sbjct: 141 EKFKGKNSKTKVTSASMSQLFQNAIQKQKKKSLSKKKGVPLEKKSMKG 188
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -1
Query: 792 LPTSXTPARCREDHEAPPGXTSFSTS-LCSRPVTXYCXDMKRGIQREPTSNTWSTISGKK 616
LPT+ +PAR R G + S S +C Y D K + + W T G
Sbjct: 24 LPTATSPARRRRRRRGGGGGAAISPSTVCHITGGSYVYDSKGNKYLDTLAGLWCTALGGS 83
Query: 615 XPG-ITIATDIICGFP 571
P + ATD + P
Sbjct: 84 EPRLVKAATDQLNKLP 99
>09_04_0175 - 15353903-15354005,15354189-15354280,15354408-15354553,
15354661-15354814,15354885-15354985,15355055-15355145,
15355146-15355378,15355501-15355736,15355839-15356066,
15356150-15356370,15356869-15356990,15357125-15357451,
15357616-15357754,15357822-15357901,15358478-15358678,
15359431-15359757,15360144-15360897
Length = 1184
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 534 LCRKYKFPSLFINQFF-PRPGTPAAKMTRVPGQEVKKRTKLLSDFFRSYEPYGHKVGETQ 358
L + S F++++ PRPG + P + + + +L+ DF Y K+G +
Sbjct: 967 LVHSMNYLSPFLSEYVVPRPGK--LNFSDNPNELLFGKIELVPDFVNDYLSVQTKMGRSN 1024
Query: 357 EVLVTDVSHDKNYF 316
E + + +D YF
Sbjct: 1025 ETTLVIIVNDLGYF 1038
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 390 EPYGHKVGETQEVLVTDVSHDKNYFVGHNEFYEQVLIP 277
E +G VG+ +E LV V +++ YF G F +V +P
Sbjct: 70 EEFGFAVGDAEEELVVSVLNEEGYFGG--GFLGRVKVP 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,675,969
Number of Sequences: 37544
Number of extensions: 366676
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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