Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I06
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.88 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 364 H*AGFSASLIQFLPATLHPHHH 299
           H  G   S   FLP + HPH H
Sbjct: 300 HSPGVYPSTAGFLPPSYHPHQH 321


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 105 YNHIFRLPYNNNMIRTKKYNSRAVY 179
           +N+ ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 105 YNHIFRLPYNNNMIRTKKYNSRAVY 179
           +N+ ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 129 YNNNMIRTKKYNSRAVYIKSM 191
           YNNN + TKK+N++   ++++
Sbjct: 374 YNNNDLDTKKWNNKISALRAL 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,384
Number of Sequences: 438
Number of extensions: 3374
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)