Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I05
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   3.1  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   4.1  
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    26   5.5  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   7.2  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 639  PYTHAADLFEVKEEXXDKGDIFYASCDEDNDCVTIELPCE 520
            P+ H+  L +++ E   +GD+FY +  +  D  +   P +
Sbjct: 1024 PHRHSVSLGQIRGESEVEGDVFYDAPSDKEDLGSSNAPLD 1063


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 531 LPCEEEIPVQTEIDSVKNDSSAITLECD---MKMLSPMTLSPKS 409
           +P   E+PV+T +DSV   ++A++   +   M   SP+   P+S
Sbjct: 147 IPNTPELPVKTTLDSVNEIAAALSTHAESSPMDATSPVDSMPES 190


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 356 KSELRLVCAGDKSKLSSTDFGDRVIGESIFMSHSNVIAE 472
           + E  L  + D  K ++ DFGD    E     H N++A+
Sbjct: 239 EDEEGLSLSEDGKKFANIDFGDYSSSEEFLKEHLNILAD 277


>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 89  HIYYIEPLQYIDEVAAIFKQLVCHFFHLNIT 181
           H+  IEP +YID++A     L C  FH   T
Sbjct: 70  HLMVIEPERYIDQLADAGASLFC--FHYEAT 98


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 292 VGILVGAIPLDWPKSR 245
           +G+LV   PLDWP+S+
Sbjct: 1   MGLLVLGTPLDWPESK 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,690
Number of Sequences: 5004
Number of extensions: 51438
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)