Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I03
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    45   1e-05
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   2.3  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    27   4.0  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -2

Query: 747 PEANERSKLYCXGGAAWTTALPASAXRELLTIGYVCSVXLSVFCKFSPICTTCHTVF 577
           P+ N R  L     A           +++L IG+VCSV LS+FC+    C+TCHT F
Sbjct: 230 PDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 421 ITSKYLIFIILPVHFHSMDTLVLRAHEY*EQVKVNLNFHFLLL 549
           I S++ +     VH H   +   + H Y +  K + NFHFLL+
Sbjct: 208 IVSQFFMNDHFLVHIHHPASFFEKMHMYYKTGKTDNNFHFLLV 250


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 595 CTYRAEFAENTQANRADVAD 654
           CTY A+FA+N    R DV D
Sbjct: 116 CTYAADFAKNQHNLRLDVID 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,629
Number of Sequences: 5004
Number of extensions: 51255
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)