Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I03
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...    42   7e-04
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373...    29   3.2  
02_05_1202 + 34932291-34933027,34933297-34933774                       29   5.5  
02_05_1049 - 33752410-33752478,33753242-33753376,33753622-337539...    29   5.5  

>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = -2

Query: 669 RELLTIGYVCSVXLSVFCKFSPICTTCHTVF 577
           ++ + +GYVCSV LS+FCK+   C+TC + F
Sbjct: 198 KKTIDMGYVCSVCLSIFCKYHKKCSTCGSEF 228


>02_05_0039 +
           25335690-25335883,25335984-25336131,25337292-25337349,
           25337652-25338116,25338435-25338575,25338694-25339934
          Length = 748

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 277 KCVTSQRLSQLCLSIACS-AFPLARSGGT*HFFVRAAGVNIFIRRYHIKTIKKAGLLL 107
           +CVTS +L  + L I+C   F +   G T        G+   IRR + K  K  GLLL
Sbjct: 327 ECVTSAKLISMALGISCGLGFVMLALGATILITKWKRGIQRRIRRAYFK--KNQGLLL 382


>02_05_1202 + 34932291-34933027,34933297-34933774
          Length = 404

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 556 DRWSSYFEDGVTRCTYRAEFAENTQANRADVADGEQF 666
           DRW S+    V    YR  FA++ +A   D A GE F
Sbjct: 230 DRWYSFIYPSVNNGVYRCGFAQSQEA--YDAAAGELF 264


>02_05_1049 -
           33752410-33752478,33753242-33753376,33753622-33753971,
           33755304-33755370
          Length = 206

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 320 PPDFKTSTWTSGLLSGRKRLNCSISLVRTL-QYAVSPVN 433
           PPDF+ +++  G L G+KR   ++ +V ++ + A+  +N
Sbjct: 99  PPDFEPASYPKGWLVGKKRKLVNVDVVESMRRIAIQEMN 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,327
Number of Sequences: 37544
Number of extensions: 335908
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)