Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H22
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092...    31   1.7  
02_05_1128 + 34314866-34315294,34315365-34315440,34315548-343156...    29   6.9  
12_02_0868 - 23839077-23839382,23839626-23839935,23840003-238401...    28   9.1  

>03_06_0334 +
           33208266-33208481,33208789-33208940,33209141-33209221,
           33209371-33209491
          Length = 189

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 215 PMPQATMPYWT*RFFS*SMGHTRGDPPSPRQVS 313
           P P    PY   RFFS S+  +RG  PSP+Q S
Sbjct: 51  PPPPPLTPY---RFFSSSVSESRGTSPSPKQES 80


>02_05_1128 +
           34314866-34315294,34315365-34315440,34315548-34315631,
           34315729-34315784,34316302-34316358,34316459-34316508,
           34316587-34316739,34316842-34316992,34317469-34317633
          Length = 406

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 373 LGRXFQLHSTFMCAGGEPXQGHLPGGRGVAPRVP 272
           LG   + H+T +C GGE  +G  P  R    R+P
Sbjct: 80  LGESRREHTTDLCGGGEERRGEKPRRRQRGERMP 113


>12_02_0868 -
           23839077-23839382,23839626-23839935,23840003-23840128,
           23840202-23840436,23840649-23840684,23841033-23841162,
           23841318-23841410,23841556-23841678,23841769-23841835,
           23841937-23842028,23842136-23842291
          Length = 557

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +1

Query: 94  LFDLGLVGSSIVSLAGDLV-VDPGPQV--RXVHVNSWSAVLSAAYAPGYDAVLDIAILLI 264
           LF  GL+   +++++  +   +P   V  R     SW+  ++  +  GYD  +  A+  +
Sbjct: 139 LFSGGLLKPKLIAVSNKVAFANPKAPVYPRLAQGKSWNE-MTVTWTSGYD--IKEAVPFV 195

Query: 265 VYGAHEGRPPVPPAGVL 315
            +GA  GR  + PAG L
Sbjct: 196 EWGAKGGRSFLSPAGTL 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,686
Number of Sequences: 37544
Number of extensions: 338996
Number of successful extensions: 967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)