Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H21
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 340 VLSFPRFAISIIDLNERSQSYLVTAYWI 423
           VLSF    + IID++E++Q  L+T  W+
Sbjct: 50  VLSFGLTLMQIIDVDEKNQ-LLITNLWL 76


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 245 LSWVCSATVAGVPSWSPSLWFAI 313
           L  VCSA V     W P  W  I
Sbjct: 544 LVMVCSAPVWRFQPWGPFTWGGI 566


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 216 RIFGGAALACCPGFARR 266
           R F     ACCPG  RR
Sbjct: 399 RAFVRILCACCPGRVRR 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,610
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)