Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H19
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718     30   1.8  
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82...    29   3.1  
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719...    28   9.5  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    28   9.5  

>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
          Length = 756

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 639 VTSPTRSK*RSPIRSPLKCQYXNLTKSSRKSLTP-SKRKCLMKSKCLLTSPTRSTRK 472
           +T P     R+P++SP+  +    T  ++ S TP SK+    K K L  SP  +  K
Sbjct: 697 ITMPRNRYWRTPVKSPVPAKKLEQTAQNKPSSTPKSKKVWKEKPKTLAPSPPETGGK 753


>10_01_0062 -
           818396-818538,819482-819693,819936-820420,820540-820696,
           820787-820924,821127-821703,821978-822018,822679-822809
          Length = 627

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 236 GCVLCINWLL*ALFKATFSLVYRSREFVTETRSCVVVICYYFVSFYMLVI 87
           GC+ C    L   F  T ++ Y S   +     CV+V+ +  V+F +LV+
Sbjct: 356 GCLFCGPLFLTFCFLNTVAIAYNSTAALPFGTICVIVLIWTLVTFPLLVL 405


>03_02_0296 +
           7191455-7191615,7192031-7192071,7192156-7192741,
           7193307-7193444,7193572-7193728,7193848-7194332,
           7194867-7195086
          Length = 595

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 236 GCVLCINWLL*ALFKATFSLVYRSREFVTETRSCVVVICYYFVSFYMLVI 87
           GC+ C    L   F  T ++ Y +   +     CV+V+ +  V+F +LV+
Sbjct: 369 GCLFCGPLFLTFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTFPLLVL 418


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 648 KAPVTSPTRSK*RSPIRSPLKCQYXNLTKS-SRKSLTPSKRKCLMKSKCLLTSPTRSTRK 472
           ++PV +P RS+ RSP R        +++ S  R+S   SK +  ++ K +  SP RS  K
Sbjct: 446 RSPVRAPERSESRSPPRE------KSISMSPQRRSARRSKSRSPLREKSVSMSPRRSMSK 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,124
Number of Sequences: 37544
Number of extensions: 241353
Number of successful extensions: 522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)