Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H18
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   5.6  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.4  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   9.8  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 512  NPRTVTEAKNFEPWREKCSVEGNPCMLGTSFLQAHFKGSSRRNHQFTN 369
            N R   E++  + WR+  +V  NP +   +      + SS  NH+ +N
Sbjct: 1460 NARREHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSN 1507


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 557 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEG 447
           D  F     V + VQ P T  +AK F P + K S EG
Sbjct: 208 DPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREG 244


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 410 HFKGSSRRNHQFTNLFEMPSQLPL 339
           HF+ S++ N   T+LFE  S+L L
Sbjct: 154 HFEASAKENTNVTDLFETVSRLAL 177


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -3

Query: 368  LFEMPSQLPLVKRPH-----GRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVGNV 216
            L+ +P  +P+    H     G WPL  S + E   +  +  I  S CSKY+  GNV
Sbjct: 1290 LYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEE--VCSVFNISKSVCSKYVQFGNV 1343


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 427 PHSCKLTSKEVPGETINLQTCLRCP 353
           P+S  +TS   PGE +N    L+ P
Sbjct: 329 PYSFPITSSVHPGEDVNFTVALKVP 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,432
Number of Sequences: 5004
Number of extensions: 69658
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)