Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_H18
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 42 7e-04
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 37 0.020
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 37 0.020
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 37 0.020
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 29 5.3
U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 28 9.3
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 457 PSKETPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTG 320
PS T C +P+ C ++ + + TCL CP YPWL +P G
Sbjct: 1830 PSLST--CDIPNKCLYSTPSLSSQEHQFLTCLPCPTMYPWLENPAG 1873
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Frame = -3
Query: 572 LQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREK--C----SVEGNP----CMLGTS 423
+ + DVY VT+ Q+I W++ P ++E K+ + C S NP C +
Sbjct: 1781 MSAQKDVYIVTIKQLIDWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNK 1840
Query: 422 FLQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHG 321
L + S + HQF P+ P ++ P G
Sbjct: 1841 CLYS-TPSLSSQEHQFLTCLPCPTMYPWLENPAG 1873
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 723 TGDQFYNFLNHNFDRHYXQNRAPLGLYFHAAWLK 622
T D+ + NF+R Y NRAP L +A +L+
Sbjct: 1730 TVDELEEIITRNFERSYSANRAPYVLSLNADFLQ 1763
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 557 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPCMLGTSFLQAHFKGSSRRN 384
DV+ VT +Q+I +++NP + K+ W+ K + E NPC T+ F G +R
Sbjct: 284 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANPCENPTT---CSFSGRAR-- 338
Query: 383 HQFTNLFEMPSQLP 342
QF + F M P
Sbjct: 339 GQFAHSFRMCGVCP 352
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 557 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPCMLGTSFLQAHFKGSSRRN 384
DV+ VT +Q+I +++NP + K+ W+ K + E NPC T+ F G +R
Sbjct: 2353 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANPCENPTT---CSFSGRAR-- 2407
Query: 383 HQFTNLFEMPSQLP 342
QF + F M P
Sbjct: 2408 GQFAHSFRMCGVCP 2421
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 557 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPCMLGTSFLQAHFKGSSRRN 384
DV+ VT +Q+I +++NP + K+ W+ K + E NPC T+ F G +R
Sbjct: 1225 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANPCENPTT---CSFSGRAR-- 1279
Query: 383 HQFTNLFEMPSQLP 342
QF + F M P
Sbjct: 1280 GQFAHSFRMCGVCP 1293
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 427 PHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDP 326
P +C+ T EV T+ Q + P +YP L DP
Sbjct: 295 PTNCRNTCNEVCAPTVASQPSTQAPQSYPVLLDP 328
>U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical
protein F31F7.2 protein.
Length = 689
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -2
Query: 561 QRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPLHAGYLIPASSLQRKFPEKP 382
Q+++ R+H T P+ + T Q+ ERK R ++ L A L P S + K P +
Sbjct: 14 QKKIHRHHTT--PLSNRTT----KQKNEKKERKKTREQQFLVAFLLYPHSQKRHKMPHRL 67
Query: 381 SIYKLV 364
+Y +V
Sbjct: 68 LLYCIV 73
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 506 RTVTEAKNFEPWREKCS 456
+ T KNFE W+EKCS
Sbjct: 26 KQATFQKNFESWKEKCS 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,067
Number of Sequences: 27780
Number of extensions: 386151
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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