Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H17
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    31   1.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   7.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   7.2  
U28731-9|AAA68301.2|  437|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   9.5  
AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 650 VTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 534
           + LYKT IRP + Y +VV +   +   K+ + +Q+ F R
Sbjct: 221 ILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 650 VTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 534
           + LYKT IRP + Y +VV +   +   K+ + +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 490  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 374
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 490  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 374
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U28731-9|AAA68301.2|  437|Caenorhabditis elegans Hypothetical
           protein F12A10.8 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 526 SEPPWFVRNVDLHDDLDLESISKYLQSASM-RHFDKAARHENPLIVAAGNYIPDPADRME 350
           S+P +   N    D L+L+S   + +++ + ++ D++ +H+  ++ + G+Y     D  +
Sbjct: 316 SKPRFDEANFHNEDPLNLDSQEDFFETSYLPKNADESKKHQKSMLPSFGDYTTKSDDERQ 375

Query: 349 SSR 341
            +R
Sbjct: 376 KNR 378


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 367 PADRMESSRRRPKHVISDPPDP 302
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical
           protein Y104H12D.3 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 305 IRRIRDDVFRATSTAFHSVRRIGNVVTGGHDERVLVSC 418
           +R++  ++ + T   FH  +    VV GG  E ++++C
Sbjct: 176 VRKMEAEILKMTCAMFHGGKDSCGVVAGGGTEALMLAC 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,006
Number of Sequences: 27780
Number of extensions: 311801
Number of successful extensions: 671
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)