Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H16
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    38   0.014
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    33   0.31 
05_03_0244 + 10857139-10857516                                         31   1.6  
05_03_0245 + 10890555-10890962                                         30   2.9  
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032...    30   2.9  
09_04_0635 - 19143721-19145165,19145255-19145306                       28   8.8  
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    28   8.8  
03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129           28   8.8  

>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = -1

Query: 206 LIMQVLQLSDEQIALLPPEQRASILLLKEQI 114
           L+ QVL +S +QI +LPPEQR  +L L++ +
Sbjct: 380 LVQQVLSMSPDQINMLPPEQRQQVLQLRDML 410


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -1

Query: 242 IPSGASDQEKAALIMQVLQLSDEQIALLPPEQRASIL 132
           +P    D E +AL+ QVLQL+ EQ++ LP EQ+  +L
Sbjct: 523 VPQLTPDVE-SALLQQVLQLTPEQLSSLPVEQQQQLL 558


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 262 CAALGMPGGICCGGFC 309
           C A+G PG  CCGG C
Sbjct: 53  CLAVGSPGATCCGGRC 68


>05_03_0245 + 10890555-10890962
          Length = 135

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 262 CAALGMPGGICCGGFC 309
           C A G PG  CCGG C
Sbjct: 62  CLAAGSPGATCCGGRC 77


>04_04_1676 -
           35302498-35302836,35302911-35302997,35303063-35303286,
           35303375-35303675,35303762-35303860,35304895-35305032,
           35305108-35305326
          Length = 468

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -3

Query: 444 AGRPAPGTAADASSPRS*LPERSAVGQCSTVQPGS---EGAFKRSTKPAETA---TANAS 283
           A  PAP      SSP +  PE +     S V+P S   E      T PA+TA   ++N S
Sbjct: 383 AAAPAPAPEMAPSSPPAEPPETATEAAGSAVRPASIKLEKDDTTGTSPADTAKSSSSNRS 442

Query: 282 WHAERCT 262
            H   C+
Sbjct: 443 PHPSSCS 449


>09_04_0635 - 19143721-19145165,19145255-19145306
          Length = 498

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 369 GQCSTVQPGSEGAFKRSTKPAETATA-NASWHAERCTG 259
           G C  +QPG E  F+ +T  A  + A N+ W   R TG
Sbjct: 416 GTCDAIQPGGE-CFRPNTTAAHASYAFNSYWQQLRKTG 452


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 148 NAPVYSC*KNKSRRAHSSVRNKNRANRFLCNSCN 47
           N P Y    + S    +S RNK R  R+L N C+
Sbjct: 365 NTPKYGLIFHSSFIGRASTRNKGRIARYLANKCS 398


>03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129
          Length = 186

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 118 CSFSRSILARCSGGNKAICSSDNCSTCIINAAFS*SEAP 234
           CS++ S +A  + G+KAI  +  C  C   AA + ++AP
Sbjct: 93  CSYNLSYMAVTTTGSKAIAVAFLCIACFALAAGAAADAP 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,160
Number of Sequences: 37544
Number of extensions: 319272
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)