Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H10
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.039
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    33   0.051
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    32   0.12 
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.27 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   3.3  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.7  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 651 NFEVHMYXHTGVKPLTCKL--CDERFAYASTLRSHRMRCHPELM 526
           + E H+  H   KP  C    CDE F+    LRSH   CH  L+
Sbjct: 99  HLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLL 142



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 657 KANFEVHMYXHTGVKPLTCKL--CDERFAYASTLRSH 553
           K++ ++H   HT VKP +C    CD +F     L  H
Sbjct: 67  KSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERH 103


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 690 TFARIXQSV*AKANFEVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRCHPEL 529
           TFA   +      N + HM  HT  +P  C +C + FA     R H  R H +L
Sbjct: 573 TFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFA-----RQHDKRRHEQL 621



 Score = 32.7 bits (71), Expect = 0.067
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 639 HMYXHTGVKPLTCKLCDERFAYASTLRSH 553
           H   HTG+K   C  C++RFA    L  H
Sbjct: 618 HEQLHTGIKAFACVTCNQRFARMDALNRH 646


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 654 ANFEVHMYXHTGVKPLTCKL--CDERFAYASTLRSHRMRCH 538
           ++ ++H Y HTG +P  C    C + F   S +R H+ R H
Sbjct: 481 SSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQ-RIH 520


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -1

Query: 639 HMYXHTGVKPLTCKL--CDERFAYASTLRSHRMRCH 538
           H+  HTG KP  C +  CD  F  +  L  H    H
Sbjct: 96  HLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = -1

Query: 639 HMYXHTGVKPLTCKL--CDERFAYASTLRSH-RMRCHPELMVPD 517
           H+  HTG KP  C    C +RF     L  H R      L+ P+
Sbjct: 22  HIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRKALVTPE 65


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = -1

Query: 417 EVEAL*EIFLNRCHKYVTIITNNASLQTTCKLFEK*NFSSLI--------VLNIGSFMDW 262
           +++A    F+    +  T++T  ASL  +CKL E+ +F  L          L+I   MDW
Sbjct: 184 DIQARRLYFIEADKEASTLVTEIASLACSCKLLEESDFEKLCQIMLPITEKLDILKLMDW 243

Query: 261 F 259
           +
Sbjct: 244 Y 244


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 537 PELMVPDGRAAYPAANYNHVPVSNNYIKNDMAPANPVAKNE 415
           P L  P     +PA   +H   S +  KND A AN    NE
Sbjct: 19  PLLWFPQPLKYWPAFQQSHTFNSMSVFKNDNAIANQTTVNE 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,679
Number of Sequences: 5004
Number of extensions: 52073
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)