Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_H10
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0366 + 7941550-7942161,7942230-7942775 31 1.2
06_03_0743 + 24069752-24070483,24071890-24072345 31 1.2
01_06_1412 - 37140654-37141088,37141549-37142214 31 1.2
09_04_0564 + 18565583-18566449,18569662-18570123 30 2.0
08_02_1172 + 24898290-24899141,24900864-24901328 30 2.0
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 3.5
09_04_0306 + 16555664-16556623 29 3.5
05_05_0022 + 21592403-21593083,21593720-21594208 29 3.5
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 29 3.5
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 8.1
04_03_0703 - 18870287-18871351,18871542-18871733 28 8.1
02_03_0250 - 16832371-16833016,16833130-16833287,16834393-16834413 28 8.1
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 28 8.1
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
+ H G +P C+ C +RFA R+H C
Sbjct: 267 QTHYRRKHGARPYACRRCGKRFAVRGDWRTHEKNC 301
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
+ H G+KP C+ C + FA R+H C
Sbjct: 300 QTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC 334
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRCHPELMVPDGRAAYPAANYNHVPVSN 466
+ H G KP C+ C + FA R+H C G +++ H N
Sbjct: 278 QTHYKRKHGAKPFRCRRCAKPFAVKGDWRTHEKNCGKRWFCACG------SDFKHKRSLN 331
Query: 465 NYIKNDMAPANPVAKNEVEA 406
+++++ A PVA++ A
Sbjct: 332 DHVRSFGAHHLPVAESAAAA 351
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
+ H G+KP C+ C + FA R+H C
Sbjct: 345 QTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNC 379
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
+ H G+KP C+ C + FA R+H C
Sbjct: 340 QTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNC 374
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 639 HMYXHTGVKPLTCKL--CDERFAYASTLRSHRMR 544
HM HTGV+P C+ C + F + S H+ +
Sbjct: 1303 HMRVHTGVRPYECQEPGCGQTFRFVSDFSRHKRK 1336
>09_04_0306 + 16555664-16556623
Length = 319
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 579 AYASTLRSHRMRCHPELMVPDGRAAYPA-ANYNHVP 475
AYAS SHR P M P YP+ +N++H+P
Sbjct: 144 AYASYYGSHRFGPSPPHMAPPPPPPYPSWSNHHHLP 179
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
+ H G KP C+ C + FA R+H C
Sbjct: 286 QTHYKRKHGAKPFACRRCAKPFAVKGDWRTHEKNC 320
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 606 TCK-LCDERFAYASTLRSHRMRCHPELMVPDGRAAYPAANYNHVPVSNNYIKNDMAPANP 430
TC+ +C++ AY + H R + EL+ P R YP ++N D A P
Sbjct: 295 TCRPVCEQILAYWAKPMLHDRRRYHELVDPLLRGDYPDKDFNQAAAVAAICIEDEASVRP 354
Query: 429 VAKNEVEAL 403
+ V AL
Sbjct: 355 YMSDIVVAL 363
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 639 HMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
H G K TC+ C +R+A + L++H C
Sbjct: 127 HFCRKHGEKRWTCQRCGKRYAVQADLKAHTKTC 159
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 599 SCATSGSPTRRRCAHIACAATRSSWS 522
S +S S +R RC AC RS+WS
Sbjct: 247 STGSSTSMSRARCCGSACGTRRSTWS 272
>02_03_0250 - 16832371-16833016,16833130-16833287,16834393-16834413
Length = 274
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -2
Query: 695 PARLLVLXKAFKRRQTLRFTCTXTLASSP*RASCATSGSPTRRRCAHI 552
PA LL+ AF+R L L + P A C SP RR CA I
Sbjct: 26 PAELLLA--AFRRVSVLAEEAAAALPADPADAECVAGSSP-RRWCARI 70
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = -1
Query: 645 EVHMYXHTGVKPLTCKLCDERFAYASTLRSHRMRC 541
+ H G + C+ C +RFA R+H C
Sbjct: 236 QTHYRRRHGARDFACRRCAKRFAVRGDWRTHEKNC 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,388
Number of Sequences: 37544
Number of extensions: 313008
Number of successful extensions: 614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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