Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H09
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    27   2.3  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    27   3.1  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   7.1  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.4  

>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 744 GQVLTQDLGGKSTCTDFXKEIIKNL 670
           G+VLT DLGGKS   +    ++ N+
Sbjct: 336 GKVLTPDLGGKSGTNEITDAVLANI 360


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 744 GQVLTQDLGGKSTCTDFXKEIIKNLK 667
           G+ LT+DLGG ++  DF   I++ ++
Sbjct: 329 GKTLTKDLGGSASTGDFTHAILERME 354


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 271 NNRLSINLYLMQVLNRIL*RRRLYSNQFVLTYQ*HFFVQMHRLPPLIIDDSFLLSQLY 444
           N+ LSI+ + M  L +IL +R LY N  +L    +   +  R    + DDS  + Q+Y
Sbjct: 317 NDELSIDFH-MAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVKFLEDDSEKVVQVY 373


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 377 FLSKCTDCHL***TTHFYYLSYTNIKGNI 463
           F+S C+DC +     H+Y + ++N++  I
Sbjct: 416 FMSACSDCKIDFIACHWYGIDFSNLQDYI 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,101
Number of Sequences: 5004
Number of extensions: 57161
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)