Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H06
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    75   1e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    44   4e-05
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    44   4e-05
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.7  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    26   7.6  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   7.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -3

Query: 753 QXPXMFRRKAXLHWYPGEGMDEMEFPEAESNMXDLVSEYQQ 631
           Q   MFRRKA LHWY GEGMDEMEF EAESNM DLVSEYQQ
Sbjct: 384 QFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = -3

Query: 741 MFRRKAXLHWYPGEGMDEMEFPEAESNMXDLVSEYQQ 631
           M+ ++A +HWY GEGM+E EF EA  ++  L  +Y++
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = -3

Query: 741 MFRRKAXLHWYPGEGMDEMEFPEAESNMXDLVSEYQQ 631
           M+ ++A +HWY GEGM+E EF EA  ++  L  +Y++
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 452 SYYINTKSKSIVDLSKGERWKGG 520
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 479 FCFSYLYSNFNSFRLQHA**NNLGSTR 399
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 754 PVXRYVQAQGFXALVPRRGHGRDGVP 677
           P    ++++GF  +  R GHG  G+P
Sbjct: 303 PFYHLIESEGFAKMAKRLGHGVYGLP 328


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 344 FVVKEKH-RECKHYLLPRHNVYFLGY 418
           +++   H R CKHY L R  + FL +
Sbjct: 707 YIIPSHHIRSCKHYFLDRLAILFLTF 732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,852
Number of Sequences: 5004
Number of extensions: 43119
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)