Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H03
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    47   3e-06
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    29   0.58 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.4  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = -2

Query: 336 NLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFS 157
           N     +++ +DE +P T +Q RL++G R     N SHT+  + E V    P      F 
Sbjct: 322 NSTTPHASLQIDENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSPG----NFI 377

Query: 156 LLTAFPSAELGDD-AATLAQANLLNSTVMQR 67
           L   FP+  L DD + T+  A+L N++++Q+
Sbjct: 378 LSVPFPAKTLEDDPSVTVEAASLKNASLVQK 408



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
 Frame = -3

Query: 731 FAGVGYRLG---QTADDHEPVSASNPQQQ------EQVRLVRLCLY--REGFTVDAGPLR 585
           +A VG RLG   + +    PV+ S P ++      +  + +R  LY  R GF+VD GP+ 
Sbjct: 172 WASVGQRLGTENEASGSTTPVTQSGPPRENPPTESQPEKPLRRTLYFWRNGFSVDDGPIY 231

Query: 584 HYSDPENAEFLSCIRRGEIPSELSG 510
            Y DP N E L  I  G  P  L G
Sbjct: 232 TYDDPANQEMLRYINSGRAPLHLLG 256


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -2

Query: 288 VTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAAT 109
           VT +Q R+ +G R   RF+ +  V  +  +V         +PFSL     S     D +T
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLD-ST 411

Query: 108 LAQANLLNSTV 76
           + +A + N+ +
Sbjct: 412 IKEAGIQNTAL 422


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 626  DTVSPVSLALVVVDSMQTLARDHLQFVLIYSQL 724
            DTV  V + +++   +QTL R+H+  VLI  Q+
Sbjct: 2299 DTVQTVGIGIIL---LQTLTREHITVVLITGQI 2328


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 671  MQTLARDHLQFVLIYSQL 724
            +QTLARDH+ F L+ +Q+
Sbjct: 2270 LQTLARDHVAFTLMLAQV 2287


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 590 LRHYSDPENAEF 555
           LRHYS+PE AEF
Sbjct: 638 LRHYSNPEIAEF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,198
Number of Sequences: 5004
Number of extensions: 35594
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)