Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_H03
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 84 1e-16
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 73 3e-13
11_06_0313 + 22306497-22308938 32 0.46
05_03_0150 - 8953545-8954024 31 1.1
06_03_0941 + 26179682-26182327 30 2.4
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 30 2.4
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 30 2.4
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 28 7.4
05_06_0250 - 26682207-26683811 28 7.4
05_05_0175 + 22966151-22967614 28 9.8
03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598... 28 9.8
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/83 (44%), Positives = 54/83 (65%)
Frame = -2
Query: 312 VTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSA 133
+ +D++ P T++Q RLADGTR+ RFN HTVG +R F+ + P RP+ L T FP
Sbjct: 260 IVVDDSLPFTSIQLRLADGTRMVARFNMHHTVGDIRSFIDASRPG-ATRPYQLQTGFPPK 318
Query: 132 ELGDDAATLAQANLLNSTVMQRL 64
+L D A T+ QA L NS ++Q++
Sbjct: 319 QLADPAQTVEQAGLANSVIIQKM 341
Score = 48.8 bits (111), Expect = 5e-06
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = -3
Query: 623 YREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL 516
+ GFTVD GPLR Y DP NA+F+ I++ + P EL
Sbjct: 163 WNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQEL 198
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 72.5 bits (170), Expect = 3e-13
Identities = 37/132 (28%), Positives = 61/132 (46%)
Frame = -2
Query: 465 EECPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPV 286
E+CP V + F G LG+P+ + +T+D++ P
Sbjct: 319 EKCPEPVKRAAPFHGAAKTLGTPSDNNSTPPEATSAAAAASSTETASKTVTITVDDSLPS 378
Query: 285 TTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAATL 106
T+LQ R DG+R+ FN SHT+ +R F+ P + ++L FP L D + T+
Sbjct: 379 TSLQIRFVDGSRMVAHFNTSHTIADVRAFIDTTRPG-EAGDYTLQAGFPPKPLDDMSKTI 437
Query: 105 AQANLLNSTVMQ 70
+A + NS ++Q
Sbjct: 438 EEAGVANSVIIQ 449
Score = 55.6 bits (128), Expect = 4e-08
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = -3
Query: 731 FAGVGYRLGQTADDHEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFL 552
FAG G L T + EPV+ PQ E + + + + GFTV+ GPLR + DP NA FL
Sbjct: 236 FAGTGRLL--TGESAEPVA---PQSPESI-VHNIYFWTNGFTVNDGPLRSFDDPANASFL 289
Query: 551 SCIRRGEIPSEL 516
I+ E PSEL
Sbjct: 290 KSIKNSECPSEL 301
>11_06_0313 + 22306497-22308938
Length = 813
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 122 SPSSALGKAVSRLNGRSWYAGSARDTNSLSAPTVWLWLNRPVMRVPSA 265
+P+SA+ ++V+R GR DT SAP + N PV++ PSA
Sbjct: 197 TPASAVNESVTRKRGRPRRVQDGADT---SAPPIQSKYNEPVLQTPSA 241
>05_03_0150 - 8953545-8954024
Length = 159
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 666 STTTRASETGETVSVPRRLHG-GRGSAAPLQRPGERGVP 553
ST T +E G+ ++V R + G G G A + PGE G P
Sbjct: 43 STVTVLAEHGDDIAVRRPVAGIGAGEEASVAAPGEHGAP 81
>06_03_0941 + 26179682-26182327
Length = 881
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 683 PVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQG 504
P+ A + + Q+++ R V AGP HY +P N + + I + E P +G
Sbjct: 347 PLDAEDKEDQDRITAER----NTPLVVTAGPSLHYPNPPNPDKVLYINKKEAPLLKVERG 402
Query: 503 VSVRVS 486
V V S
Sbjct: 403 VPVTFS 408
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -3
Query: 737 GLFAGVGYRLGQTADDHEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAE 558
GLF G+ +L + D++ + + P+ EQ+ L E +RH DP++
Sbjct: 497 GLFFGINSKLNKILDEYIHLPEAAPKPSEQIPLAASGHVSEELARKQYDVRHTHDPDSTS 556
Query: 557 F 555
+
Sbjct: 557 Y 557
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -3
Query: 713 RLGQTA-DDHEPVSASNPQ---QQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSC 546
+LG T D + V A+N + L+ LCL E F D L +P+ ++C
Sbjct: 895 KLGYTILSDEQLVLANNSNLSNNSTDIALLMLCLLTEAFYADGTSLGDVCEPKLGAEITC 954
Query: 545 IRR 537
+RR
Sbjct: 955 LRR 957
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -3
Query: 656 QEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVS--VRVSX 483
+EQV R LY E T+ ++SD + + R G++P + + S RV+
Sbjct: 261 EEQVVSFRQGLYEEAVTISMAKSAYFSDTDRC---TPARHGQVPDQAASASWSSLKRVTN 317
Query: 482 RGQQTXRSVPG-TWSSRRPSPGKGTC 408
Q R++P RP +C
Sbjct: 318 VKQTPRRTIPSMNHGGDRPGKENQSC 343
>05_06_0250 - 26682207-26683811
Length = 534
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 183 PAYQLRPFSLLTAFPSAELGDD--AATLAQANLLNSTV 76
PA+QLRP L FP + D ++TL L N T+
Sbjct: 198 PAHQLRPLDRLHIFPHQGICSDPRSSTLTSLTLANCTI 235
>05_05_0175 + 22966151-22967614
Length = 487
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 548 SSGTPRSPGRCSGAADPRPP 607
++GTPRS RC G P P
Sbjct: 85 AAGTPRSAARCGGGGSPGAP 104
>03_06_0515 +
34457933-34458343,34458822-34459000,34459491-34459812,
34459945-34460025
Length = 330
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 711 IRTNCR*SRASVCIESTTTRASETGETVSVPRRLHGGRGSAAPLQRPGERG 559
+R CR S A+ + + RAS G T+SV + GG G +R +RG
Sbjct: 8 LRLPCRCSLAAAAVPAPP-RASP-GPTISVSMSVDGGEGELTGRERRKQRG 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,917,995
Number of Sequences: 37544
Number of extensions: 319845
Number of successful extensions: 1331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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