Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_H03
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024876-10|AAP31418.1| 193|Caenorhabditis elegans Hypothetical... 73 2e-13
AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical ... 73 2e-13
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 34 0.13
AF106584-2|AAC78222.2| 316|Caenorhabditis elegans Hypothetical ... 29 3.8
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 29 3.8
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 28 8.9
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 28 8.9
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 28 8.9
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 28 8.9
AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear recep... 28 8.9
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 28 8.9
AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear recep... 28 8.9
AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear recep... 28 8.9
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 28 8.9
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 28 8.9
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 28 8.9
>AC024876-10|AAP31418.1| 193|Caenorhabditis elegans Hypothetical
protein Y94H6A.9b protein.
Length = 193
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/90 (36%), Positives = 52/90 (57%)
Frame = -2
Query: 333 LRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSL 154
L A+ ++ + +P T +Q RL + R+ G FNHSHT+ A+R F+ A P PF +
Sbjct: 99 LEDAKKELSTNMNEPTTNIQIRLPNNQRLVGIFNHSHTLEAVRTFICTARPDMIYAPFQM 158
Query: 153 LTAFPSAELGDDAATLAQANLLNSTVMQRL 64
+ A+P D++ TL AN+LNS V ++
Sbjct: 159 MAAYPPKPFEDESQTLKDANVLNSVVAVKI 188
>AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical
protein Y94H6A.9a protein.
Length = 301
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/90 (36%), Positives = 52/90 (57%)
Frame = -2
Query: 333 LRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSL 154
L A+ ++ + +P T +Q RL + R+ G FNHSHT+ A+R F+ A P PF +
Sbjct: 207 LEDAKKELSTNMNEPTTNIQIRLPNNQRLVGIFNHSHTLEAVRTFICTARPDMIYAPFQM 266
Query: 153 LTAFPSAELGDDAATLAQANLLNSTVMQRL 64
+ A+P D++ TL AN+LNS V ++
Sbjct: 267 MAAYPPKPFEDESQTLKDANVLNSVVAVKI 296
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -3
Query: 665 PQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ 507
P +E + L L L+ +G +++ GPL DP EFL + +GEIP L Q
Sbjct: 84 PSGRETISLT-LHLWSDGLSIEDGPLMSRQDPRTIEFLESVGKGEIPPSLVQQ 135
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -2
Query: 285 TTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDD 118
TTLQFRL DG + +F + + +R +V A + PF+L+T FP +D
Sbjct: 223 TTLQFRLLDGQTVRQQFEANEPLAMVRAWV-ETNHANGV-PFTLMTPFPRKVFTED 276
>AF106584-2|AAC78222.2| 316|Caenorhabditis elegans Hypothetical
protein F54A5.3a protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 617 EGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ 507
+GFTV A P+RH S F+S R + ++ G+
Sbjct: 173 DGFTVPAPPMRHRSSLHRQSFVSNCRAPTVTEDVVGK 209
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 578 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSXR 480
SDPENAEFLS + + SG ++V++ +
Sbjct: 509 SDPENAEFLSIKEARKTVEDASGCKIAVKIKNK 541
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 43 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 72
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 58 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 87
>Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical
protein K10C3.6b protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 34 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 63
>Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical
protein K10C3.6a protein.
Length = 477
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 34 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 63
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F ++TV + NY CRY C R AC
Sbjct: 59 FFWRTVKSRLNYVCRYGGNCSISTAGRNAC 88
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 160 EWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSELQRSDGLRFVECDGALCGAE 333
EW +L + +E+ RA+ VAV + +DA Q+ +R +C A C ++
Sbjct: 1486 EWKKLSEEQKKHYEM--RAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQ 1541
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 160 EWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSELQRSDGLRFVECDGALCGAE 333
EW +L + +E+ RA+ VAV + +DA Q+ +R +C A C ++
Sbjct: 1486 EWKKLSEEQKKHYEM--RAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQ 1541
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 160 EWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSELQRSDGLRFVECDGALCGAE 333
EW +L + +E+ RA+ VAV + +DA Q+ +R +C A C ++
Sbjct: 116 EWKKLSEEQKKHYEM--RAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQ 171
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F ++TV + NY CRY C R AC
Sbjct: 59 FFWRTVKSRLNYVCRYGGNCSISTAGRNAC 88
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F ++TV + NY CRY C R AC
Sbjct: 59 FFWRTVKSRLNYVCRYGGNCSISTAGRNAC 88
>AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 28 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 57
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +T+ QQ Y CR+ +C + R AC
Sbjct: 64 FFRRTIRSQQTYTCRFTQKCAIDKDQRNAC 93
>AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 33 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 62
>AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 474
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +TVL Q + CR+ RC+ + R AC
Sbjct: 31 FFRRTVLRDQKFTCRFNKRCVIDKNFRCAC 60
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +T+ QQ Y CR+ +C + R AC
Sbjct: 59 FFRRTIRSQQTYTCRFTQKCAIDKDQRNAC 88
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +T+ QQ Y CR+ +C + R AC
Sbjct: 59 FFRRTIRSQQTYTCRFTQKCAIDKDQRNAC 88
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 14 FLYKTVLIQQNYWCRYLSRCMTVELSRFAC 103
F +T+ QQ Y CR+ +C + R AC
Sbjct: 59 FFRRTIRSQQTYTCRFTQKCAIDKDQRNAC 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,956,595
Number of Sequences: 27780
Number of extensions: 228022
Number of successful extensions: 873
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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