Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H02
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7GZ38 Cluster: Maturase-related protein; n=1; Campylob...    35   2.0  
UniRef50_Q1V0G6 Cluster: Type II Secretion System PilB; n=2; Can...    33   6.2  
UniRef50_Q4RQJ6 Cluster: Chromosome 2 SCAF15004, whole genome sh...    33   8.2  
UniRef50_Q9Y1V6 Cluster: HrPET-3; n=1; Halocynthia roretzi|Rep: ...    33   8.2  
UniRef50_Q244X3 Cluster: Zinc finger domain, LSD1 subclass famil...    33   8.2  

>UniRef50_A7GZ38 Cluster: Maturase-related protein; n=1;
           Campylobacter curvus 525.92|Rep: Maturase-related
           protein - Campylobacter curvus 525.92
          Length = 421

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 232 YITFAVFIPNAITTIQVLYVTGAPLHVLCYVNGF*RAKIINFV--AYFLYIITQFHVTVV 405
           YIT AVF  +  +    + V     +V  YV GF    +INF+   YF+YI  +F   + 
Sbjct: 339 YITVAVFFTSVFSLYYRILVIANKQYVYLYVMGF--GAVINFLLNLYFIYIYKEFGAIIT 396

Query: 406 T 408
           T
Sbjct: 397 T 397


>UniRef50_Q1V0G6 Cluster: Type II Secretion System PilB; n=2;
           Candidatus Pelagibacter ubique|Rep: Type II Secretion
           System PilB - Candidatus Pelagibacter ubique HTCC1002
          Length = 583

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = -1

Query: 435 DGEKLVRLTSNNGDVELSDNVKKICNEINDFCSSKAIDIAQYMERRASDIEDLDCSDCVR 256
           DG+ L     ++  + L  N+K I  +  +  ++K  DI++Y+ER +S+ +++  +  +R
Sbjct: 100 DGKTLHMAIPDSSKLGLMRNLKAITKKNIELHAAKIGDISEYIERLSSETDEVTIAS-IR 158

Query: 255 NEN 247
           NEN
Sbjct: 159 NEN 161


>UniRef50_Q4RQJ6 Cluster: Chromosome 2 SCAF15004, whole genome
           shotgun sequence; n=2; Percomorpha|Rep: Chromosome 2
           SCAF15004, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 485

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 224 RTMLGT*SSYPALRPSWTRGRAVKVTGTTIDRLT 123
           RT  G  +S+P  R  W RG+    TG  IDRLT
Sbjct: 183 RTKEGLFTSFPPRRQDWFRGKRSVYTGCDIDRLT 216


>UniRef50_Q9Y1V6 Cluster: HrPET-3; n=1; Halocynthia roretzi|Rep:
           HrPET-3 - Halocynthia roretzi (Sea squirt)
          Length = 680

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 729 PHSAXTLRRHRHSKSVGSYRDDQETPTFDQSTTSIMGSESN 607
           P S  + R HRHS S GS  ++  TP    STT+++   S+
Sbjct: 306 PQSTTSQRAHRHSGSSGSSSNNNATPATCASTTTLVSPVSS 346


>UniRef50_Q244X3 Cluster: Zinc finger domain, LSD1 subclass family
            protein; n=3; root|Rep: Zinc finger domain, LSD1 subclass
            family protein - Tetrahymena thermophila SB210
          Length = 3235

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 450  SFIIGDGEKLVRLTSNNGDVELSDNVKKICNEINDFCSSKAIDIAQYMERRASDIEDLDC 271
            ++ IGD +   +  ++NG    +D  KK C+ I   CS       Q +E +  +   L C
Sbjct: 937  NYFIGDTQNCGKCETSNGYYVDNDRCKK-CDSICKTCSDSTQKCDQCIEGKFKNSSTLIC 995

Query: 270  SDCVRNE 250
             DC  N+
Sbjct: 996  GDCDLNQ 1002


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,895,245
Number of Sequences: 1657284
Number of extensions: 12181071
Number of successful extensions: 36286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36253
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)