Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H02
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.3  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.8  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   5.4  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   5.4  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -1

Query: 723  SAXTLRRHRHSKSVGSYRDDQETPTFDQSTTSIMGSESNIYNMKLSQGNSEAASTLKTHS 544
            S+ TL     S +  S     E+     +T+ +  S S I +   S+ NSE+AST     
Sbjct: 961  SSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASK 1020

Query: 543  SDSAIPTL 520
              S+  +L
Sbjct: 1021 RSSSSTSL 1028


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 381 DNVKKICNEINDFCSSKAIDIAQYMERRASDIEDLDCSDC 262
           +NVK ICN+         +D+ Q +   + D+++L+ S C
Sbjct: 174 NNVKDICNKFRPENIHVLVDMTQQVGLSSIDVQELNVSAC 213


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = -1

Query: 390 ELSDNVKKICNEINDFCSSKAIDIAQYMERRASDIEDL 277
           +LS+++ ++C+  +++ S KA+  A  + ++  D+E L
Sbjct: 165 DLSNDIAELCSNHHNYISKKAVLCALRVIQKEPDLESL 202


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 408 SNNGDVELSDNVKKICNEINDFCSSKAIDIAQYMERRASDIE 283
           + NG  +LS   KK+  +++   ++K I+    M+  AS IE
Sbjct: 29  TGNGHSDLSIPEKKLKEDVDQVSTTKPIEAVPKMKTNASKIE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,438
Number of Sequences: 5004
Number of extensions: 48737
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)