Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_H01
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 135 6e-33
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 52 9e-08
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 48 1e-06
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 36 0.005
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 31 0.24
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.72
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.2
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 2.9
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 27 3.9
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 27 3.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.9
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 135 bits (327), Expect = 6e-33
Identities = 56/78 (71%), Positives = 66/78 (84%)
Frame = -3
Query: 349 GEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLD 170
GEIVGGSMRI D +EL+ YKREGIDP+PYYW+T+QRK+G+ HGG GLGLERFL WL D
Sbjct: 490 GEIVGGSMRISDIQELLAAYKREGIDPAPYYWFTEQRKYGTTEHGGCGLGLERFLAWLCD 549
Query: 169 RYHIRDVCLYPRFLERCT 116
RY +R+ CL+PRF ERCT
Sbjct: 550 RYTVRECCLFPRFTERCT 567
Score = 102 bits (245), Expect = 5e-23
Identities = 50/91 (54%), Positives = 61/91 (67%)
Frame = -2
Query: 623 PEL*KTTEPFKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLC 444
P+ K + PF R++Y +AI+YL +NI +G ++FG+DI E ERKMTD I PI L
Sbjct: 399 PDFVKPSRPFMRLSYEDAIKYLNEHNILTPEGEQHKFGDDIAEAAERKMTDQINRPIFLT 458
Query: 443 KFPAEIKSFYMSRCVDDRRLTESVDVLMPGV 351
FP EIKSFYM R VD LTESVD LMP V
Sbjct: 459 YFPLEIKSFYMKRVVDRPELTESVDCLMPNV 489
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 52.0 bits (119), Expect = 9e-08
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = -3
Query: 349 GEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLL- 173
GE+ GGS+R DH ++ YK P WY D K+ + PHGG+GLG+ER + +L
Sbjct: 369 GELAGGSLRK-DH---LDEYKTY---PPELQWYLDLMKYSNAPHGGFGLGIERLIAFLEG 421
Query: 172 DRYHIRDVCLYPR 134
+ ++++ +PR
Sbjct: 422 ENTNVKETIPFPR 434
Score = 40.3 bits (90), Expect = 3e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = -2
Query: 602 EPFKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAI-GVPILLCKFPAEI 426
+P+K MTY EAIE L A + K ++G D+ E+ + + + P+ + +P +I
Sbjct: 288 KPWKCMTYSEAIEELSA--VKKTWKYPPKWGNDLSSEHEKYLCEILHKTPVFVTDYPQKI 345
Query: 425 KSFYMSRCVDDRRLTESVDVLMPGV 351
K FYM D +VD+L+P V
Sbjct: 346 KPFYMKSSGPD--TVAAVDLLVPQV 368
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -3
Query: 346 EIVGGSMRIWDHEELMEGYKREGIDPSP-YYWYTDQRKFGSVPHGGYGLGLERFLCWLLD 170
EI+ G+ RI D E L+E K G+ P Y D G PH G G+GLER + + L+
Sbjct: 502 EIMSGAQRIHDPELLVERMKALGVSPDVGLQQYIDAFAIGCPPHAGGGIGLERVVMFYLN 561
Query: 169 RYHIRDVCLYPR 134
+IR +PR
Sbjct: 562 LPNIRLASSFPR 573
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 443 KFPAEIKSFYMSRCVDDRRLTESVDVLMPG--VRGDRRRLHE 324
K+P+ ++ FY +D R + S D M G + +R+H+
Sbjct: 471 KYPSSVRPFYTMPDPEDPRYSNSYDFFMKGQEIMSGAQRIHD 512
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 238 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 137
++G P GG+G+G++R + +L D IR+V L+P
Sbjct: 542 EYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFP 575
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 232 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 134
G PHGG LG +R L + IR+V +P+
Sbjct: 544 GCPPHGGIALGFDRLAALLTNAPGIREVIAFPK 576
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.72
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 440 TCTAVSARQWRPSSSALAFPGCPLQTRRRI 529
TC + R W S FP CP + RR+
Sbjct: 1152 TCKMIEKRLWPTMSPLRQFPNCPSEVIRRV 1181
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 235 FGSVPHGGYGLGLERFLCWLLD 170
FG+ P Y + F+CWL D
Sbjct: 201 FGTSPFNAYQQNTDNFVCWLFD 222
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -3
Query: 235 FGSVPH---GGYGLGLERFLCWLLDR 167
FG + H G Y + L+ F+ WLLDR
Sbjct: 396 FGGLHHCILGRYSISLDDFVLWLLDR 421
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 131 EARVETHVPDVVPVQEPAEEALQTQPVAAVRHRAELA 241
+ R + +PD+V V +P EE T+P + E A
Sbjct: 196 KTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVEAA 232
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 401 VDDRRLTESVDVLMPGVRGDRRRLHEDMGPRGADGRLQARR 279
V + + T SVDV +PGV+ + ++H D G G + R
Sbjct: 41 VHEGKDTVSVDVELPGVKKEDVQVHYDSGKLTISGEVVNER 81
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 537 LRNVVGAEILYRFYIRHTFERFCGFLKF 620
L + V E +Y Y TFER+C F F
Sbjct: 3445 LNSSVFPESIYYDYFYKTFERYCDFWFF 3472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,494
Number of Sequences: 5004
Number of extensions: 51806
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -