Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_G24
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1125 + 31085106-31085714 31 0.95
08_02_1011 - 23544917-23544964,23545334-23545822,23546661-235470... 30 2.2
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 30 2.2
06_03_0809 + 24814590-24816593 30 2.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 30 2.9
09_06_0026 + 20312364-20312687,20312780-20312950 29 3.8
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 29 3.8
01_06_1570 + 38312319-38314259 29 3.8
10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978 29 5.1
02_02_0610 - 12113162-12113965 29 5.1
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 29 6.7
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 6.7
07_03_0318 - 16721615-16722154 29 6.7
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207... 29 6.7
06_01_0805 + 6043248-6043551,6043654-6043755,6044858-6044964,604... 29 6.7
01_02_0075 + 10873789-10873871,10873883-10874420 29 6.7
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 8.8
>04_04_1125 + 31085106-31085714
Length = 202
Score = 31.5 bits (68), Expect = 0.95
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +3
Query: 309 PHPISPSISPQATGPTGKGTPNAALTGTWSPVQNTSAPTAIASATCMSGPLPFP 470
P P +P+ P P TP W+P T PT AT + P P P
Sbjct: 51 PTPATPTTPPTPWTPP-PATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPAP 103
>08_02_1011 -
23544917-23544964,23545334-23545822,23546661-23547054,
23548707-23549104
Length = 442
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 296 DPPPSASNLSQ--HIAASYRSNGQGDAQR 376
DPPPSA++L+ HI +RS GQ + +R
Sbjct: 5 DPPPSAADLAPRIHIGMEWRSRGQIEMER 33
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 196 SRDSLARKYIHSS---SSTCSSPRWM*ASPIVRRNERSSAFRIQSLPAYRRKLPVQRARG 366
SR L K + S S + S PR + SP+ RR+ R +S+ + +R+R
Sbjct: 480 SRSPLREKSVSMSPRRSMSKSLPRSVSRSPVARRSRSPVKARTRSISRSSARSLQRRSRS 539
Query: 367 RPTLRLPVRGLQSRT 411
R R PVR SR+
Sbjct: 540 RSLERSPVRKSVSRS 554
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 252 STLDVGLSHSP-PQ*TILRLPHPISPSISPQATGPTGKGTPNA-ALTGTW 395
+T+ V L H P P T+L P P SP+ +P + P P++ + +G W
Sbjct: 231 TTMLVPLKHRPKPDVTVLPEPGPPSPAPAPAVSAPPPPAVPSSESGSGRW 280
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 242 PVALHAGCRPLP*SAAMNDPPPSASN---LSQHIAASYRSNGQ 361
PVA A RP P AA P PS SN +S +SY S+G+
Sbjct: 21 PVAAAAARRPAPSPAAAAAPAPSPSNPSAVSDSDPSSYSSSGE 63
>09_06_0026 + 20312364-20312687,20312780-20312950
Length = 164
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 352 GPVACGDMLGEIGCGRRRIVHCGG 281
G A G++ E+GCGRRR C G
Sbjct: 33 GAGAMGEVTHEMGCGRRRDCRCDG 56
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 321 SPSISPQATGPTGKGTPNAALTGTWSPVQ--NTSAPTAIASATCMSG 455
+PS +P T G TP SP + +TSAP+ +AT SG
Sbjct: 96 TPSAAPGGTSARGSSTPGGRSGRGTSPARAPSTSAPSTSPTATTRSG 142
>01_06_1570 + 38312319-38314259
Length = 646
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 342 ATGPTGKGTPNAALTGTWSPVQNTSAPTAIASATCMSGPLPFPLAN 479
+ GPT GT N AL S ++S+P + ++ T M+ P+A+
Sbjct: 211 SAGPTSPGTANCALGLALSTPSSSSSPASSSNHTNMAVATAIPVAS 256
>10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978
Length = 299
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 TLDVGLSHSPPQ*TILRLPHPI-SPSISPQATGPTGKGTPNAALTGTWSPVQNTSAPTAI 431
TL G + +P Q + PI PS++ Q P G G PNA Q +P A
Sbjct: 225 TLGFGTNQAPIQ-AAMTWSQPIFDPSMAAQQVPPVGAGQPNAM---AQPHAQAAISPFAT 280
Query: 432 ASATCMSGPLPFPL 473
T + P +PL
Sbjct: 281 PYVTSKNDPKIYPL 294
>02_02_0610 - 12113162-12113965
Length = 267
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 270 LSHSPPQ*TILRLPHPISPSISPQATGPTGKGTPNAALTGTWSPVQNTSAPTAIASATCM 449
L H P+ L S + QATGP G T N T S V ++ A+ T +
Sbjct: 106 LYHVLPRYYTLATFQTASNPLRTQATGPAGVYTVNVTTTTGQSLVNVSTGVAAVPLGTTL 165
Query: 450 SGPLPFPLANL*G 488
S P + ++ G
Sbjct: 166 SADFPLAVYSVDG 178
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 342 ATGPTGKGTPNAALTGTWSPVQNTSAPTAIASATCMSGPLPFP 470
+ P+ GTP A G + +A A ASA ++GP P P
Sbjct: 33 SASPSAPGTPTAMGAGGGAAPIAAAAIAAAASAAVVAGPRPAP 75
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 229 SSSSTCSSPRWM*ASPIVRRNERSSAFRIQSLPAYRRKLPVQRARGRPTLRLPVRG--LQ 402
++SST S R M AS RR S+ Y + +RG+P R P R L
Sbjct: 45 ATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQP--RFPRRRYVLL 102
Query: 403 SRTLLLQRPSLLRHVCPAHCH 465
L + P LL +C AH H
Sbjct: 103 PPGSLAESPPLLDRICLAHGH 123
>07_03_0318 - 16721615-16722154
Length = 179
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 333 SPQATGPTGKGTPNAALTGTW-SPVQNTSAPTAIASAT 443
+P+AT TG A TW S + +A TA+ AT
Sbjct: 31 APEATAATGDTAATGAAAATWASSATSATAATAVTGAT 68
>07_01_0282 -
2070027-2070041,2074763-2075062,2075154-2075722,
2075812-2076337
Length = 469
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 309 PHPISPSISPQATGPTGKGTP 371
PHP SPS A+ PT GTP
Sbjct: 431 PHPPSPSAEGSASPPTTPGTP 451
>06_01_0805 +
6043248-6043551,6043654-6043755,6044858-6044964,
6045687-6045824,6046340-6046651
Length = 320
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 273 SHSPPQ*TILRLPHPISPSISPQAT--GPTGKGTPNAALTGTWSPVQNTSAPTAIASAT 443
S PP + P P P ++ A P P T TWS + +PT +A+AT
Sbjct: 23 SDDPPAASDPSSPPPPPPPVAVAAATADPPPPAQPQGQKTVTWSEKLTSESPTYVAAAT 81
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = -1
Query: 470 RKWQWAGHTCRRSDGRWSRSV----LDWRPRTGKRSVGRPLARWTGSLRRYAGRDWMRKA 303
R+W+ AG R G SR + + WR R G RP RW AG + + +
Sbjct: 80 RRWRGAGSDGWRCGGGGSRRIWQAAVGWRRRRGPAVERRPTMRWRRQPPDLAGGNGVAEE 139
Query: 302 E 300
E
Sbjct: 140 E 140
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 312 HPISPSISPQATGPTGKGTPNAALTGTWSPVQNTSAPTAIASATCMSGP 458
+P +PS+ P +P+ +G +SP SAP + +S T + P
Sbjct: 379 YPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTP 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,983,156
Number of Sequences: 37544
Number of extensions: 528128
Number of successful extensions: 1896
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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