Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G21
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    68   2e-12
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   9.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.7  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 35/87 (40%), Positives = 46/87 (52%)
 Frame = -3

Query: 613 DVPAAHIFNPKXLEFQVVRTLXLPGXLXTXAANKKXPLPLELFEISXVVXLXXXXXXGAX 434
           D  A  + NPK LEFQVVR+  LPG L T   NK   LP+++FE+S V            
Sbjct: 422 DSKAVQLANPKTLEFQVVRSSLLPGILKTVRENKNHALPIKIFEVSDVAFCDYSRERMTR 481

Query: 433 XXRGXXGVXFGGAAGXQXVHGLVDRVM 353
             R    +  G  +G + +HGL+DRVM
Sbjct: 482 NERHLCAIFAGLNSGFEQIHGLLDRVM 508


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = -3

Query: 778 PXPXPXXXXRKRPPPXKIXGXXXGKGGPAPXTXXRS--PSXFXSRGE 644
           P P P    +  PPP  +         PAP T   S  P  + S+ E
Sbjct: 732 PTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPE 778


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 684 VXGAGPPXPKXXPXILXGGG 743
           V GAGPP P   P  +  GG
Sbjct: 770 VAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,763
Number of Sequences: 5004
Number of extensions: 13539
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)