Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G20
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.8  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   2.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   3.1  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    26   5.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   7.2  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.5  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 516 ELD*QTPRPVSSPISWR--SFPLGPTPTS 436
           E+D  +PR  S+P+SWR  S P+ P   S
Sbjct: 598 EIDPSSPRDDSTPLSWRSHSHPIPPVQVS 626


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 656 VCRCLIPISDSRTRTS*QTLPVIGEILNPSRGIGLHAYSSHEA*YCWNW 510
           + R L+ + D+    S +  P IG  + P    G   YSS+E  +CW W
Sbjct: 332 ILRKLLKVLDASMCHS-KAAPTIGYNIKPKHAEG---YSSNEITHCWFW 376


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 607 NRLYPLSEKYSTLLEELGYMHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNPDF 437
           N L  L EKY +++ EL    ++  K  +V  G+     GL + + +K S   NP+F
Sbjct: 335 NSLRELQEKYDSVVSEL--QVVKENKNTSVSAGV-----GLFSPLAQKLSAVQNPEF 384


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 502 DSPAGLLAYILEKFSTWTNPDFRSKEDGGLSYRWTKDQLIDNL 374
           D   G  ++I EKF  +  PD  +  DGG  Y   K    +NL
Sbjct: 43  DGGQGCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFNNL 85


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = +2

Query: 647 TDKLKECRRWTKSK-------RHVGVEXDYSLREESS-HSATDESPP 763
           +D+ KE   W K++       +  G+E DYSL EE   H   DE  P
Sbjct: 335 SDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRP 381


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 406 RWTKDQLIDNLMLYWSTKSIVTSMRLYAE 320
           +W  DQ I    LY + + +V  +R Y E
Sbjct: 291 KWANDQRIGQEELYEAAEKVVLELRSYTE 319


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 613 LANRLYPLSEKYSTLLEELGYMHIQATK-PDTVGIGLTDSPAGLLAYILEK 464
           L  RL+PL+E Y   +     ++ QATK PD V  G   S   L A+I++K
Sbjct: 371 LMKRLFPLAELYYKRMATDVPLNFQATKAPDFVPEGPWKSHP-LPAFIVDK 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,955
Number of Sequences: 5004
Number of extensions: 65177
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)