Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G20
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   162   3e-40
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    31   0.72 
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    31   0.72 
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    31   1.3  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    31   1.3  
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    28   8.9  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score =  162 bits (393), Expect = 3e-40
 Identities = 81/186 (43%), Positives = 111/186 (59%), Gaps = 3/186 (1%)
 Frame = -1

Query: 793 YXQXYVXGGDWGALIGSAMATFFPKGIIGFHSNMALTLSPA---ATFLEFVGALFPSLIV 623
           Y + Y+ GGDWGA+I S +   +P+ ++  H NM   +  A    TF + +G L PS + 
Sbjct: 218 YNKFYLQGGDWGAIITSLLTKVYPQNVMALHLNMMPAMPGANALGTFYDILGWLIPSTLS 277

Query: 622 EPELANRLYPLSEKYSTLLEELGYMHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNP 443
             E+     P S K+  L+ E GYMH+QATKPDT G  L DSP GL AYI+EKFSTWTN 
Sbjct: 278 SKEIQKTHNPFS-KFGLLIVETGYMHLQATKPDTAGTSLNDSPIGLAAYIIEKFSTWTNT 336

Query: 442 DFRSKEDGGLSYRWTKDQLIDNLMLYWSTKSIVTSMRLYAESFSSRHFDLKLDEIQVQVP 263
           + R+  DGGL+ R+T D+L+  +M+YW+  +IV+S R Y E F  R  +  L +  V  P
Sbjct: 337 ENRALPDGGLNKRFTNDELLTIVMIYWTNGNIVSSQRFYREMFLDRRCE-ALGKRYVSTP 395

Query: 262 XVGAPG 245
              A G
Sbjct: 396 TAHASG 401


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 155 HFLSFELPEIFAKDVPE--GNRRVQKTQE 75
           HFL+ E PE F  + PE   NRRV KT E
Sbjct: 245 HFLNHETPEYFELNYPESFNNRRVVKTSE 273


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 155 HFLSFELPEIFAKDVPE--GNRRVQKTQE 75
           HFL+ E PE F  + PE   NRRV KT E
Sbjct: 245 HFLNHETPEYFELNYPESFNNRRVVKTSE 273


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 751 IGSAMATFFPKGIIGFHSNMALTLSPAATFLEFVGALFPSLIVEPELANRLYPL---SEK 581
           IG + + F  K    FHSN  L  SP+ T LE  G + P  +V   L +R   +   S++
Sbjct: 79  IGGSFSGFDDKVDNVFHSNNNLHGSPSTTELECPGIMNPRFLVGRSLNSRSRAVTRGSKR 138

Query: 580 YSTLLEELGYMH 545
            S + E  G +H
Sbjct: 139 TSNVKENEGSIH 150


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 751 IGSAMATFFPKGIIGFHSNMALTLSPAATFLEFVGALFPSLIVEPELANRLYPL---SEK 581
           IG + + F  K    FHSN  L  SP+ T LE  G + P  +V   L +R   +   S++
Sbjct: 79  IGGSFSGFDDKVDNVFHSNNNLHGSPSTTELECPGIMNPRFLVGRSLNSRSRAVTRGSKR 138

Query: 580 YSTLLEELGYMH 545
            S + E  G +H
Sbjct: 139 TSNVKENEGSIH 150


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
 Frame = -1

Query: 571 LLEELGYMHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNPDFRSKEDGGLSYRWTKD 392
           +LE+L +M +          G  D P  L   I+   ++    DF  KED   S    +D
Sbjct: 130 ILEDLDHMAVHVAYVHNSENGSLDGPMTLPRTIVT--ASVKRIDFH-KEDINSS----RD 182

Query: 391 QLIDNLMLYWSTKSIVTSMRLYAESFSSR-HFDLKLDEIQVQVPXVGAPGEIRV 233
            +ID  + Y  T S+ TS+RL+    S      LK D I V    +    +IRV
Sbjct: 183 VIIDGQVSYAGTSSMQTSIRLFQNDDSGNLILLLKADFIMVSRDPLDGTKKIRV 236


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -1

Query: 613 LANRLYPLSEKYSTLLEEL---GYMHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWT 449
           LAN+  P+S  +   L E+     + IQ T P+T  I +   P+G+L  IL+  S+ T
Sbjct: 323 LANKFVPISNIFDFRLREVCNKNNVTIQ-TFPETQSISIVGPPSGVLNKILKGLSSVT 379


>U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical
           protein W09C3.1 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 170 IEDGGHFLSFELPEIFAKDVPEGNRRVQKTQERE 69
           +  G + +  EL + FAKDVP    R +KT + +
Sbjct: 354 VPGGNNLIMAELVDFFAKDVPLKKAREEKTDDNK 387


>AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical
           protein M04F3.3 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 170 IEDGGHFLSFELPEIFAKDVPEGNRRVQKTQERE 69
           +  G + +  EL + FAKDVP    R +KT + +
Sbjct: 354 VPGGNNLIMAELVDFFAKDVPLKKAREEKTDDNK 387


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 454 WTNPDFRSKEDGGLSYRWT-KDQLIDNLMLY 365
           W  PDF  K+  G    WT K Q  D ++L+
Sbjct: 241 WVPPDFHQKQTPGHRQWWTMKSQHFDTILLF 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,591
Number of Sequences: 27780
Number of extensions: 364623
Number of successful extensions: 914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)