Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G19
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.30 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.30 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    26   0.30 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    26   0.30 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   0.69 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.7  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 636 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 532
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 93  ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 128


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 636 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 532
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 152 ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 187


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 636 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 532
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 93  ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 128


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 636 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 532
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 152 ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 187


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 589 RRDHKRMLRARQTRW*-NATPVMASTWLAVCCTVVTSC 479
           R   KR+  A  TR   N   ++ +TW+++ C  VT+C
Sbjct: 284 RGPRKRLRFAYVTRTGANIKKLIVNTWISLFCVKVTNC 321


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 468 HILGHDVTTVQHTASHVLAMTGVAFHH 548
           H  GH +    H  +H +A  G   HH
Sbjct: 324 HHAGHHIHAQHHVVNHHVAANGSLKHH 350


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 494 GTAYSKPCTCHDGGRISPSGLAGS 565
           G A++ P   HD G  SP G  G+
Sbjct: 50  GNAHTGPTGTHDAGFPSPRGALGA 73


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 116 PHPRLQRSPCRLLRNPSRGQPGP 184
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 116 PHPRLQRSPCRLLRNPSRGQPGP 184
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 665  PVSTSHWSRTRQSSLPRRPT 606
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 451  PSKPSVLSNSSTGVQPVSRSVSTTSHP 371
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,031
Number of Sequences: 336
Number of extensions: 4268
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)