Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G17
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.82 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   7.6  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
 Frame = +3

Query: 255  GGANPSXXFPASNXVXYLPXNTSPXIXRGPMGFGTSSAXXPDRHTVCPNCATRSTXS--- 425
            G  +P    P S+ +      TSP       G+ TS A  P   +  P   + S  S   
Sbjct: 1533 GVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSY 1592

Query: 426  LPSSVKSFPAMVKVTRGRCGMRLXSTTYCPKAMAVAPTAALRAPTS 563
             P+S    P     +         S +Y P + + +PT+   +PTS
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 684 GXRXXPPVLXGVXPPXKIPPXXPRGPXKXKK 776
           G    PP   G  PP + PP  P G  K +K
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/68 (30%), Positives = 26/68 (38%)
 Frame = +3

Query: 414 STXSLPSSVKSFPAMVKVTRGRCGMRLXSTTYCPKAMAVAPTAALRAPTSLEGPGISXXP 593
           S  SLP SV   PAM K T          +T+  K +   P   L  P     P IS   
Sbjct: 158 SLLSLPKSVPHSPAMHKRTPSSDPNNPFGSTFANKFLDHIPAEPLPLPAR---PQISDLS 214

Query: 594 VXERPNXP 617
              +P+ P
Sbjct: 215 FFRKPSLP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,154
Number of Sequences: 5004
Number of extensions: 25077
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)