Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_G17
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 82 5e-16
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 81 1e-15
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 76 4e-14
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 48 1e-05
10_06_0145 + 11215895-11216860 29 4.6
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 6.1
01_06_0154 - 27049218-27049517,27049679-27050107 29 6.1
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 82.2 bits (194), Expect = 5e-16
Identities = 35/79 (44%), Positives = 48/79 (60%)
Frame = -2
Query: 496 CSLIPHLPRVTFTIAGNDFTLEGNXYVLRVAQXGHTVCLSGXMALXVPKPMGPLWXLGXV 317
CS + +P + FTI GN F L+ Y+L+V + T C+SG A+ +P P GPLW LG V
Sbjct: 438 CSSLASMPDIAFTIGGNKFVLKPEQYILKVGEGTATQCISGFTAMDIPPPRGPLWILGDV 497
Query: 316 XIGKXYTXFXAGNXXLGFA 260
+G +T F GN +GFA
Sbjct: 498 FMGAYHTVFDYGNLKVGFA 516
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 81.0 bits (191), Expect = 1e-15
Identities = 35/79 (44%), Positives = 46/79 (58%)
Frame = -2
Query: 496 CSLIPHLPRVTFTIAGNDFTLEGNXYVLRVAQXGHTVCLSGXMALXVPKPMGPLWXLGXV 317
C I +P + FTIA F L Y++++ Q G TVC+SG MA +P P GPLW LG V
Sbjct: 415 CHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDV 474
Query: 316 XIGKXYTXFXAGNXXLGFA 260
+G +T F G +GFA
Sbjct: 475 FMGAYHTVFDFGKDRIGFA 493
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 75.8 bits (178), Expect = 4e-14
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = -2
Query: 496 CSLIPHLPRVTFTIAGNDFTLEGNXYVLRVAQXGHTVCLSGXMALXVPKPMGPLWXLGXV 317
C + +P ++FTI G F L+ Y+L+V + C+SG A+ +P P GPLW LG V
Sbjct: 428 CGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDV 487
Query: 316 XIGKXYTXFXAGNXXLGFA 260
+G +T F G +GFA
Sbjct: 488 FMGAYHTVFDYGKMRVGFA 506
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = -2
Query: 421 YVLRVAQXGHTVCLSGXMALXVPKPMGPLWXLGXVXIGK 305
YV+++ Q G TVC+SG MA VP P GPLW I K
Sbjct: 399 YVVKLEQQGQTVCISGFMAFDVPPPRGPLWYTNYTVIKK 437
>10_06_0145 + 11215895-11216860
Length = 321
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = +3
Query: 387 TVCPNCATRSTXSLPSSVKSFPAMVKVTRGRCGMRLXSTTYCPKAMAVAPTAALRAPTSL 566
T A + S ++ P +VK G C + STT A V+ T + +PTS
Sbjct: 208 TTADTAAAAAPASTNTTPPPSPRVVKTEPGCCSVSEASTTTTADAADVSSTGSSPSPTS- 266
Query: 567 EGPGISXXPVXERPNXP 617
+ P RP P
Sbjct: 267 SNQAATATPPAPRPPPP 283
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 498 STTYCPKAMAVAPTAALRAPTSLEGPGISXXPVXERPNXPGQKXGXVELTXS 653
S +Y P + A +PT+ +PTS PG S P+ P V+ T S
Sbjct: 1770 SPSYSPTSSAYSPTSPAYSPTS---PGYSPTSPSYSPSSPSYNPSSVKYTPS 1818
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = +3
Query: 348 GFGTSSAXXPDRHTVCPNCATRSTXSLPSSVKSFPAMVKVTRGRCGMRLXSTTYCPKAMA 527
G G ++A P R C NC T ST ++ P K CG+R A A
Sbjct: 112 GAGAAAASAPRR---CANCDTTSTPLW----RNGPRGPKSLCNACGIRYKKEERRAAAAA 164
Query: 528 VAPTA 542
VAPTA
Sbjct: 165 VAPTA 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,561
Number of Sequences: 37544
Number of extensions: 249904
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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